Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq32 104 5e-17
seq334 93.3 9e-14
seq18 86.0 1e-11
>seq32
Length=147838
Score = 104 bits (114), Expect = 5e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410
|| || || || ||||| ||||||||||| || |||| ||||| ||||| ||| |||
Sbjct 109359 GACCTTTGCGAGTGTGAGTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTCAACAACACC 109300
Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470
||| || | ||||||||||| || || ||||| ||| ||||| || || || |||
Sbjct 109299 CGCATCCGCCTCAAGCGTGGCCGTCGTTACGGTCTTTGCGGCCCCAACGGTGCCGGAAAG 109240
Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGA 279529
||| || ||||| ||||| |||| ||| | | ||| ||||| | ||| ||
Sbjct 109239 TCCACCCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCAGAGCGA 109181
Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563
||| | ||| |||| || ||||||||| | |||
Sbjct 109180 GGTCAAGACTGTGTTCGTTGAGCACGACCTTGAC 109147
>seq334
Length=742376
Score = 93.3 bits (102), Expect = 9e-14
Identities = 178/259 (69%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 293122 TGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCC 293181
||||| | ||||||||||| |||||||| | | | | ||| || ||||||||||
Sbjct 394433 TGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAATGGTCCTCTGAGAGATCTCC 394492
Query 293182 CACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGAC 293241
|| |||||||| | ||||||| ||||| | |||| | || ||||| || ||
Sbjct 394493 CAGACGGTCTTGTAGAGGGCCTTGATATCAGCCGGGATGCTAGGAATGTTCTGAATGGAA 394552
Query 293242 CCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGCAATG--A 293299
|| | | ||| || || |||||||||| | ||| ||||| | ||||| || |
Sbjct 394553 CCATCCTCGGCGATGATACGGTTCTTCATGGCCTCAGACCACAAGC--CGAGCTCTGTCA 394610
Query 293300 GCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGT 293359
| || | || || ||| |||||| || ||||||| |||||||| || || ||
Sbjct 394611 GATCCCTGAGGAGCCAAGGGTTGACGACCTGGAACTCGCCAGCGAGCACACGTCGCTGGT 394670
Query 293360 AAATGTTCGAAGTG-ATGG 293377
| ||||| || ||| ||||
Sbjct 394671 AGATGTTGGAGGTGTATGG 394689
>seq18
Length=162934
Score = 86.0 bits (94), Expect = 1e-11
Identities = 178/260 (68%), Gaps = 15/260 (6%)
Strand=Plus/Minus
Query 280107 TATCCCAATGGCCCCAA--CATCTTCAGCAG-TGTCAACTCGCAGGTTTCTATGAACTCA 280163
|||||||| | ||||| |||| | || | ||||| || ||| |||| || ||
Sbjct 130691 TATCCCAAGGCTCCCAAGCCATCCTTGGCCGATGTCACCTGCCAGCTTTCCCTGTCGTCT 130632
Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223
|| | | |||||| || ||||||||||| || ||||| || || || || | || ||
Sbjct 130631 CGCGTGGCTGTCATCGGGCCCAATGGTGCTGGAAAGTCGACGCTCATTAAGCTGCTTACA 130572
Query 280224 GGCGA---GACCCAGGCCACT-GAGGGGTCCGTTTGG--AAGCATCCCAACATGCGGATG 280277
||||| || || | | || || || ||| ||||| |||||| |||| ||
Sbjct 130571 GGCGAAGTGATCCCGACGTCTGGAAAGG------TGGAAAAGCACCCCAACCTGCGTATC 130518
Query 280278 GCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAAC 280337
| |||| || |||||||| | | ||| | |||| ||||| || | ||| ||||||
Sbjct 130517 GGTTACATCAAGCAGCACGCGCTTGAGCACGTGGAGATGCACCTTGAGAAGACGCCTAAC 130458
Query 280338 CAATACATTCAGTGGCGCTA 280357
||||| | |||||||| ||
Sbjct 130457 CAATATCTCCAGTGGCGTTA 130438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027823828378385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |