Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq32 104 5e-17 seq334 93.3 9e-14 seq18 86.0 1e-11 >seq32 Length=147838 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || || || || ||||| ||||||||||| || |||| ||||| ||||| ||| ||| Sbjct 109359 GACCTTTGCGAGTGTGAGTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTCAACAACACC 109300 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 ||| || | ||||||||||| || || ||||| ||| ||||| || || || ||| Sbjct 109299 CGCATCCGCCTCAAGCGTGGCCGTCGTTACGGTCTTTGCGGCCCCAACGGTGCCGGAAAG 109240 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGA 279529 ||| || ||||| ||||| |||| ||| | | ||| ||||| | ||| || Sbjct 109239 TCCACCCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCAGAGCGA 109181 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 ||| | ||| |||| || ||||||||| | ||| Sbjct 109180 GGTCAAGACTGTGTTCGTTGAGCACGACCTTGAC 109147 >seq334 Length=742376 Score = 93.3 bits (102), Expect = 9e-14 Identities = 178/259 (69%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 293122 TGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCC 293181 ||||| | ||||||||||| |||||||| | | | | ||| || |||||||||| Sbjct 394433 TGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAATGGTCCTCTGAGAGATCTCC 394492 Query 293182 CACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGAC 293241 || |||||||| | ||||||| ||||| | |||| | || ||||| || || Sbjct 394493 CAGACGGTCTTGTAGAGGGCCTTGATATCAGCCGGGATGCTAGGAATGTTCTGAATGGAA 394552 Query 293242 CCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGCAATG--A 293299 || | | ||| || || |||||||||| | ||| ||||| | ||||| || | Sbjct 394553 CCATCCTCGGCGATGATACGGTTCTTCATGGCCTCAGACCACAAGC--CGAGCTCTGTCA 394610 Query 293300 GCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGT 293359 | || | || || ||| |||||| || ||||||| |||||||| || || || Sbjct 394611 GATCCCTGAGGAGCCAAGGGTTGACGACCTGGAACTCGCCAGCGAGCACACGTCGCTGGT 394670 Query 293360 AAATGTTCGAAGTG-ATGG 293377 | ||||| || ||| |||| Sbjct 394671 AGATGTTGGAGGTGTATGG 394689 >seq18 Length=162934 Score = 86.0 bits (94), Expect = 1e-11 Identities = 178/260 (68%), Gaps = 15/260 (6%) Strand=Plus/Minus Query 280107 TATCCCAATGGCCCCAA--CATCTTCAGCAG-TGTCAACTCGCAGGTTTCTATGAACTCA 280163 |||||||| | ||||| |||| | || | ||||| || ||| |||| || || Sbjct 130691 TATCCCAAGGCTCCCAAGCCATCCTTGGCCGATGTCACCTGCCAGCTTTCCCTGTCGTCT 130632 Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || | | |||||| || ||||||||||| || ||||| || || || || | || || Sbjct 130631 CGCGTGGCTGTCATCGGGCCCAATGGTGCTGGAAAGTCGACGCTCATTAAGCTGCTTACA 130572 Query 280224 GGCGA---GACCCAGGCCACT-GAGGGGTCCGTTTGG--AAGCATCCCAACATGCGGATG 280277 ||||| || || | | || || || ||| ||||| |||||| |||| || Sbjct 130571 GGCGAAGTGATCCCGACGTCTGGAAAGG------TGGAAAAGCACCCCAACCTGCGTATC 130518 Query 280278 GCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAAC 280337 | |||| || |||||||| | | ||| | |||| ||||| || | ||| |||||| Sbjct 130517 GGTTACATCAAGCAGCACGCGCTTGAGCACGTGGAGATGCACCTTGAGAAGACGCCTAAC 130458 Query 280338 CAATACATTCAGTGGCGCTA 280357 ||||| | |||||||| || Sbjct 130457 CAATATCTCCAGTGGCGTTA 130438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027823828378385