Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq279 127 2e-24
seq512 116 4e-21
seq24 102 8e-17
>seq279
Length=349471
Score = 127 bits (140), Expect = 2e-24
Identities = 250/365 (68%), Gaps = 21/365 (6%)
Strand=Plus/Minus
Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282
||||| ||||| || || ||||||||| || || | || || || ||||||||| ||
Sbjct 262975 ATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTCGTGATGAGGGTCTGCACACCGAC 262916
Query 47283 TTTGCCTGTCTCTACTACAA-CACTAGAGT---CGATCAA--AAGTTGGACGTGCCCACC 47336
|| ||||||||| | | ||| ||| || ||| ||| | |||| |||
Sbjct 262915 TTCGCCTGTCTCCTGTTCTCTCACCTGAGGAACCGTCCAAGCAAGCAG--CGTGTCCAG- 262859
Query 47337 GTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396
||||| | |||| || ||||||||||||| |||||| || |||||||||||
Sbjct 262858 ------GACATCATCACCGAGGCTGTCGCCATTGAGAAGGAGTTCTTGACCGAGGCTCTG 262805
Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456
|| | | | || |||||| | | | |||| |||||||||| ||||| |||
Sbjct 262804 CCATGCGCCCTCCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTTGCC 262745
Query 47457 GACCG---CCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTC 47513
||||| |||| ||| || | || | ||| ||||| | | ||| || |||
Sbjct 262744 GACCGTCTCCTGGTCGCTCTGGGCAACGAG---AAGGTTTACAAGTCGTCGAACCCCTTC 262688
Query 47514 GAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGC 47573
|| || ||| | ||||| || |||| |||||||||||||| || |||||||| |||||
Sbjct 262687 GACTTCATGGAGAACATCTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGT 262628
Query 47574 GAATA 47578
|| ||
Sbjct 262627 GACTA 262623
>seq512
Length=287951
Score = 116 bits (128), Expect = 4e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| || || || || ||||| ||| | || || ||| || ||||| ||||||
Sbjct 18213 GTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGCCCATCCTCGAGCTGCTTTCCA 18272
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||| |||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 18273 GCAAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 18332
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | |||||| |||| ||| | || ||||| ||||||||
Sbjct 18333 ACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGAGTC 18392
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 18393 TTGACGAAGATCTGCAT 18409
Score = 105 bits (116), Expect = 6e-18
Identities = 145/200 (73%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| |||||||| ||||| ||| | ||||| || || ||||| || ||
Sbjct 18441 GTAGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 18500
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | |||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 18501 GCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 18560
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||| || | |||||| || | ||| | || ||||| || || ||
Sbjct 18561 ACGTTG-TCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGT 18619
Query 127096 TTTTACAAAAATCTGCATGG 127115
|| || || ||||||||||
Sbjct 18620 CTTCACGAAGATCTGCATGG 18639
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | ||| || || || || || ||||| ||
Sbjct 17955 CCACCACGGAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAT 18014
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || ||| || | ||| || |||||| | || | || ||||| || || ||
Sbjct 18015 AGCGTCCGGCCATCTTCCAACTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGTGGA 18074
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || || ||||| |||| || | ||||||| ||||||
Sbjct 18075 ATTCCCTCCTTGTCCTGAATCTTAGACTTGACGTTG-TCAATCGTGTCCGATGACTCGAC 18133
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||| ||||| |||| || || || |||||||||||
Sbjct 18134 CTCAAGCGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 18181
>seq24
Length=629884
Score = 102 bits (112), Expect = 8e-17
Identities = 132/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| || ||||| ||| || ||||| || || ||| |||||
Sbjct 219418 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 219359
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044
||||||||||| || || || ||||||||||||||| ||| || ||||| |||| ||
Sbjct 219358 AATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TC 219300
Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
|| |||||| | ||| || || | ||| | || ||||| ||||| || || || ||
Sbjct 219299 GATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 219240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475494945396400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |