Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq279 127 2e-24 seq512 116 4e-21 seq24 102 8e-17 >seq279 Length=349471 Score = 127 bits (140), Expect = 2e-24 Identities = 250/365 (68%), Gaps = 21/365 (6%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 ||||| ||||| || || ||||||||| || || | || || || ||||||||| || Sbjct 262975 ATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTCGTGATGAGGGTCTGCACACCGAC 262916 Query 47283 TTTGCCTGTCTCTACTACAA-CACTAGAGT---CGATCAA--AAGTTGGACGTGCCCACC 47336 || ||||||||| | | ||| ||| || ||| ||| | |||| ||| Sbjct 262915 TTCGCCTGTCTCCTGTTCTCTCACCTGAGGAACCGTCCAAGCAAGCAG--CGTGTCCAG- 262859 Query 47337 GTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396 ||||| | |||| || ||||||||||||| |||||| || ||||||||||| Sbjct 262858 ------GACATCATCACCGAGGCTGTCGCCATTGAGAAGGAGTTCTTGACCGAGGCTCTG 262805 Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456 || | | | || |||||| | | | |||| |||||||||| ||||| ||| Sbjct 262804 CCATGCGCCCTCCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTTGCC 262745 Query 47457 GACCG---CCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTC 47513 ||||| |||| ||| || | || | ||| ||||| | | ||| || ||| Sbjct 262744 GACCGTCTCCTGGTCGCTCTGGGCAACGAG---AAGGTTTACAAGTCGTCGAACCCCTTC 262688 Query 47514 GAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGC 47573 || || ||| | ||||| || |||| |||||||||||||| || |||||||| ||||| Sbjct 262687 GACTTCATGGAGAACATCTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGT 262628 Query 47574 GAATA 47578 || || Sbjct 262627 GACTA 262623 >seq512 Length=287951 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || || ||||| ||| | || || ||| || ||||| |||||| Sbjct 18213 GTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGCCCATCCTCGAGCTGCTTTCCA 18272 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 18273 GCAAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 18332 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| |||| ||| | || ||||| |||||||| Sbjct 18333 ACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGAGTC 18392 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 18393 TTGACGAAGATCTGCAT 18409 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| |||||||| ||||| ||| | ||||| || || ||||| || || Sbjct 18441 GTAGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 18500 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 18501 GCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 18560 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | |||||| || | ||| | || ||||| || || || Sbjct 18561 ACGTTG-TCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGT 18619 Query 127096 TTTTACAAAAATCTGCATGG 127115 || || || |||||||||| Sbjct 18620 CTTCACGAAGATCTGCATGG 18639 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||| || || || || || ||||| || Sbjct 17955 CCACCACGGAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAT 18014 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || | ||| || |||||| | || | || ||||| || || || Sbjct 18015 AGCGTCCGGCCATCTTCCAACTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGTGGA 18074 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||||| |||| || | ||||||| |||||| Sbjct 18075 ATTCCCTCCTTGTCCTGAATCTTAGACTTGACGTTG-TCAATCGTGTCCGATGACTCGAC 18133 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| |||| || || || ||||||||||| Sbjct 18134 CTCAAGCGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 18181 >seq24 Length=629884 Score = 102 bits (112), Expect = 8e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || || ||| ||||| Sbjct 219418 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 219359 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 ||||||||||| || || || ||||||||||||||| ||| || ||||| |||| || Sbjct 219358 AATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TC 219300 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | ||| || || | ||| | || ||||| ||||| || || || || Sbjct 219299 GATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 219240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494945396400