Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq512 93.3 4e-14
seq1 89.7 5e-13
>seq512
Length=287951
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| || |||||||| |||||||| ||||| || || ||
Sbjct 17955 CCACCACGGAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAT 18014
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| ||||| || || || ||| | || | ||||||||||| || |||
Sbjct 18015 AGCGTCCGGCCATCTTCCAACTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGTGGA 18074
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|| || || || || ||||| || |||| || | || | ||||| || ||||||||
Sbjct 18075 ATTCCCTCCTTGTCCTGAATCTTAGACTTGA-CGTTGTCAATCGTGTCCGATGACTCGAC 18133
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | ||| ||||| || | || || || ||||| |||||
Sbjct 18134 CTCAAGCGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 18181
>seq1
Length=1124325
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| ||||| || | || || || ||||| || || ||||| ||||| || || ||| |
Sbjct 67694 CCACCGCGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 67635
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| || || | || || || ||| | |||| || |||||||| || |||
Sbjct 67634 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGA 67575
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|||||||| || || || || || |||| || | ||||||||||||||| ||
Sbjct 67574 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 67515
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | || ||||| || || || || || || || |||||
Sbjct 67514 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 67468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451997634710600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |