Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq512 138 3e-27
seq1 132 1e-25
seq24 102 2e-16
>seq512
Length=287951
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| || ||||| ||||| |||| ||||||||||| | |||| ||||||
Sbjct 17970 AGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCAGATAGCGTCCGGCCATCT 18029
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| || ||||| |||||||| |||||||| || |||||| || |||
Sbjct 18030 TCCAACTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGTGGAATTCCCTCCTTGTCC 18089
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| || | ||||| | || || || || | ||||||||||
Sbjct 18090 TGAATCTTAGACTTGACGTTGTCAATCGTGTCCGATGACTCGACCTCAAGCGTGATCGTC 18149
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| | || || || ||||| ||
Sbjct 18150 TTGCCCGTCAAGGTCTTGACGAAAATCTG 18178
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| || ||||| || ||||||||||| | ||||||||| | | ||
Sbjct 18417 CGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTG 18476
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| ||||| ||||| || ||||||||||| || || ||
Sbjct 18477 CGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCC 18536
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| |||| ||| || | | || || || |
Sbjct 18537 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGG 18596
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || ||||| || || ||
Sbjct 18597 GTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTG 18634
Score = 107 bits (118), Expect = 5e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| ||||| || ||||| |||| ||||||||| | | || | |||||
Sbjct 18198 AGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGCCCATCC 18257
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||| || ||||| |||||||||||||| || || || || |||
Sbjct 18258 TCGAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 18317
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||||| | || || || | || || |||
Sbjct 18318 TGGATCTTGGACTTGACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTC 18377
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || ||||| || || || || ||
Sbjct 18378 TTGCCAGTCAGAGTCTTGACGAAGATCTG 18406
>seq1
Length=1124325
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| ||||| || || |||||||| |||| ||||||||| | | ||
Sbjct 67688 CGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 67629
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| ||||||||||| |||||||||||||| || ||| |||
Sbjct 67628 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCT 67569
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| |||||| | | || || || |
Sbjct 67568 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 67509
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| |||||||| || ||||| || || ||
Sbjct 67508 GTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTG 67471
>seq24
Length=629884
Score = 102 bits (112), Expect = 2e-16
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||| | || || | ||||| || |||||||| ||||||||||
Sbjct 219420 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 219361
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | ||||||||||| || ||| || || ||||| ||||| ||| ||| |
Sbjct 219360 TCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 219301
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| |||||| | | || || || | ||||| ||||| ||||| || || ||||| |
Sbjct 219300 CGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGA 219241
Query 199620 A 199620
|
Sbjct 219240 A 219240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178906721640995
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |