Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq279 172 5e-38
seq1 136 4e-27
seq512 134 1e-26
seq24 105 7e-18
>seq279
Length=349471
Score = 172 bits (190), Expect = 5e-38
Identities = 334/483 (69%), Gaps = 14/483 (3%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
|||||||| || || || || || | | || ||| | ||| || || ||||||||
Sbjct 262638 TTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTC 262697
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | ||||| ||| | |||| ||| |||| || || | |||||| || |||
Sbjct 262698 GACGACTTGTAAACCTTCTCGTTGCC---CAGAGCGACCAGGAGACGGTCGGCAACAAAC 262754
Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800
|||||||| ||| |||| | | | || | || || || |||| ||||| || ||
Sbjct 262755 TCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGGGCGCAT-GGCAGAGCCTC 262813
Query 132801 GGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859
||| | ||| | || ||| |||||||| || ||||||| ||| ||| || ||| |
Sbjct 262814 GGTCAAGAACTCCTT-CTCAATGGCGACAGCCTCGGTGATGATGTCCTGGACACGCTGCT 262872
Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919
||| || || | | || || ||||| | || || |||||| |||| ||||
Sbjct 262873 TGCTTGGACGGTTCCTCAGGTGAGAGAACAGGAGACAGGCGAAGTCGGTGTGCAGACCCT 262932
Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979
| || | |||||||| |||||| ||| |||| ||| ||||||||||| || || ||||
Sbjct 262933 CATCACGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGA 262992
Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039
|||| || || | |||||| ||| ||||||| |||||||||||| ||||| || |
Sbjct 262993 GCCAGAAAATAGAGGCGAATGCGCCACTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAA 263052
Query 133040 CCAGGCGCTCGCCGAACGTGG-CT-TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGC 133097
|||| |||| | || | |||| || | | ||| |||||| || ||||| |||||
Sbjct 263053 CCAGTCGCTGGGCGTAGGTGGACTCGCGGTCCTG--GATCCACTTGAGAGCCCAGTCGGC 263110
Query 133098 CTT 133100
|||
Sbjct 263111 CTT 263113
Score = 145 bits (160), Expect = 8e-30
Identities = 198/276 (72%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||||||||||||||| ||| ||| | || ||||| | ||||||||| ||| || ||
Sbjct 263238 GTAGGTGTCGATGAGAAGCGAGTACGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 263297
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| |||||||| | ||| || || ||| ||||| ||||| ||
Sbjct 263298 GCCGTAGAAGCAGCGCGCCTCTGGGATCTGAACCTCGCCGCTGAAGCGCTCCACCAGGTT 263357
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||||||||||| || || || ||||| ||||| || | ||| || ||| | ||
Sbjct 263358 CTCGTTGACGATTCCATCTGAAGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGTATCG 263417
Query 133347 CTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
|||| |||| ||| ||| | ||||||| || ||||||||| || || | ||||||
Sbjct 263418 TTCGTCGTCGGTCAGGCGGTTGCTCCAGTCGTGCAGGTCCTTGGAGAGATCGATCTCCTC 263477
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| || || || || || ||||||||
Sbjct 263478 GGCAGTCCAGAAGGAAGCTTCATGCTTCTTGTACAT 263513
>seq1
Length=1124325
Score = 136 bits (150), Expect = 4e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||||||||| || |||||| | || || ||| | ||
Sbjct 67468 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 67527
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| || || |||||| | |||||
Sbjct 67528 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 67587
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| ||||| || |||| ||||||||| ||||||||||
Sbjct 67588 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 67647
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || ||||| |||| |||||
Sbjct 67648 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 67682
>seq512
Length=287951
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| || ||
Sbjct 18637 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCCTCC 18578
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || |||| ||||| ||||| || ||| | |||||
Sbjct 18577 GATACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 18519
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || ||||| ||||| || |||| ||||||||| |||||||||
Sbjct 18518 GCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAA 18459
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| |||||||| | || || ||| | || || ||| | | |||||
Sbjct 18458 CATTCAAAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTTCGTGGCGG 18411
Score = 123 bits (136), Expect = 2e-23
Identities = 159/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | |||||||| || ||||| | || |||||| | |
Sbjct 18181 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATCACGCTTGAGGTCGAGTCATCG 18122
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || || || | ||||| ||||||||||| | |||||
Sbjct 18121 GACACGATTGACAACG-TCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCAGACCA 18063
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || ||||||| ||| ||||| ||| |||| || | || || || ||||||||
Sbjct 18062 GCAACGTCTCATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACGCTATCTGACTACAA 18003
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| |||||| |||||||||| ||||||| |||
Sbjct 18002 CATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGT 17966
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||| ||| |||| |||||| || |
Sbjct 18409 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCA 18350
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| | |||||
Sbjct 18349 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 18290
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || ||||| || || | ||| |||||| ||||||||||
Sbjct 18289 CAGCGTCTGATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGAACCCTCTCCGACTACAAC 18230
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| |||||| | || || || |||| || ||
Sbjct 18229 ATCCAGAAGGAATCTACTCTTCACCTGGTTCTCCG 18195
>seq24
Length=629884
Score = 105 bits (116), Expect = 7e-18
Identities = 134/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| || |||||| | || || ||| || | |||| | |
Sbjct 219240 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCTGACACCATC 219299
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| |
Sbjct 219300 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGATT 219358
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| ||||| ||||| || || | |||||||| ||||||||||||||| ||
Sbjct 219359 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 219418
Query 38432 GG 38433
||
Sbjct 219419 GG 219420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500166641622400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |