Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq279 172 5e-38 seq1 136 4e-27 seq512 134 1e-26 seq24 105 7e-18 >seq279 Length=349471 Score = 172 bits (190), Expect = 5e-38 Identities = 334/483 (69%), Gaps = 14/483 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || | | || ||| | ||| || || |||||||| Sbjct 262638 TTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTC 262697 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| ||| | |||| ||| |||| || || | |||||| || ||| Sbjct 262698 GACGACTTGTAAACCTTCTCGTTGCC---CAGAGCGACCAGGAGACGGTCGGCAACAAAC 262754 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 |||||||| ||| |||| | | | || | || || || |||| ||||| || || Sbjct 262755 TCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGGGCGCAT-GGCAGAGCCTC 262813 Query 132801 GGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 ||| | ||| | || ||| |||||||| || ||||||| ||| ||| || ||| | Sbjct 262814 GGTCAAGAACTCCTT-CTCAATGGCGACAGCCTCGGTGATGATGTCCTGGACACGCTGCT 262872 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||| || || | | || || ||||| | || || |||||| |||| |||| Sbjct 262873 TGCTTGGACGGTTCCTCAGGTGAGAGAACAGGAGACAGGCGAAGTCGGTGTGCAGACCCT 262932 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 | || | |||||||| |||||| ||| |||| ||| ||||||||||| || || |||| Sbjct 262933 CATCACGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGA 262992 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || || | |||||| ||| ||||||| |||||||||||| ||||| || | Sbjct 262993 GCCAGAAAATAGAGGCGAATGCGCCACTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAA 263052 Query 133040 CCAGGCGCTCGCCGAACGTGG-CT-TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGC 133097 |||| |||| | || | |||| || | | ||| |||||| || ||||| ||||| Sbjct 263053 CCAGTCGCTGGGCGTAGGTGGACTCGCGGTCCTG--GATCCACTTGAGAGCCCAGTCGGC 263110 Query 133098 CTT 133100 ||| Sbjct 263111 CTT 263113 Score = 145 bits (160), Expect = 8e-30 Identities = 198/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||| ||| | || ||||| | ||||||||| ||| || || Sbjct 263238 GTAGGTGTCGATGAGAAGCGAGTACGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 263297 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| |||||||| | ||| || || ||| ||||| ||||| || Sbjct 263298 GCCGTAGAAGCAGCGCGCCTCTGGGATCTGAACCTCGCCGCTGAAGCGCTCCACCAGGTT 263357 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||| || || || ||||| ||||| || | ||| || ||| | || Sbjct 263358 CTCGTTGACGATTCCATCTGAAGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGTATCG 263417 Query 133347 CTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 |||| |||| ||| ||| | ||||||| || ||||||||| || || | |||||| Sbjct 263418 TTCGTCGTCGGTCAGGCGGTTGCTCCAGTCGTGCAGGTCCTTGGAGAGATCGATCTCCTC 263477 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || || || |||||||| Sbjct 263478 GGCAGTCCAGAAGGAAGCTTCATGCTTCTTGTACAT 263513 >seq1 Length=1124325 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | || Sbjct 67468 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 67527 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| || || |||||| | ||||| Sbjct 67528 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 67587 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 67588 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 67647 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| |||| ||||| Sbjct 67648 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 67682 >seq512 Length=287951 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| || || Sbjct 18637 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCCTCC 18578 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || |||| ||||| ||||| || ||| | ||||| Sbjct 18577 GATACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 18519 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || |||| ||||||||| ||||||||| Sbjct 18518 GCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAA 18459 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||||| | || || ||| | || || ||| | | ||||| Sbjct 18458 CATTCAAAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTTCGTGGCGG 18411 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| || ||||| | || |||||| | | Sbjct 18181 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATCACGCTTGAGGTCGAGTCATCG 18122 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || || || | ||||| ||||||||||| | ||||| Sbjct 18121 GACACGATTGACAACG-TCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCAGACCA 18063 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| ||||| ||| |||| || | || || || |||||||| Sbjct 18062 GCAACGTCTCATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACGCTATCTGACTACAA 18003 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| |||||||||| ||||||| ||| Sbjct 18002 CATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGT 17966 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||| ||| |||| |||||| || | Sbjct 18409 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCA 18350 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 18349 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 18290 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || ||||| || || | ||| |||||| |||||||||| Sbjct 18289 CAGCGTCTGATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGAACCCTCTCCGACTACAAC 18230 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||||| | || || || |||| || || Sbjct 18229 ATCCAGAAGGAATCTACTCTTCACCTGGTTCTCCG 18195 >seq24 Length=629884 Score = 105 bits (116), Expect = 7e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| || |||||| | || || ||| || | |||| | | Sbjct 219240 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCTGACACCATC 219299 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 219300 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGATT 219358 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | |||||||| ||||||||||||||| || Sbjct 219359 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 219418 Query 38432 GG 38433 || Sbjct 219419 GG 219420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166641622400