Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq512 116 2e-21 seq24 91.5 1e-13 seq1 89.7 3e-13 >seq512 Length=287951 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || ||| ||||| ||||| ||||| || ||| |||| |||| || Sbjct 18200 AACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGCCCATCCTC 18259 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| ||||| || || || |||||||| | || | ||||||||||| Sbjct 18260 GAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 18319 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||||| || | ||||| || || ||| || |||| ||| |||| Sbjct 18320 GATCTTGGACTTGAC--AT--TGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGG 18375 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||| || |||||||||||| Sbjct 18376 TCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATA 18410 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| || ||| | || | || || ||||| || |||||||| Sbjct 18447 TCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 18506 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 18507 ATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 18566 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || || | ||| ||||| || || ||||| |||||||| Sbjct 18567 TCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACG 18626 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 18627 AAGATCTGCAT 18637 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | || |||| |||| ||| || || || || Sbjct 17990 TTCCTTCTGGATGTTGTAGTCAGATAGCGTCCGGCCATCTTCCAACTGCTTGCCAGCGAA 18049 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || |||||||||||| | || | ||||||||||| |||||| |||||| Sbjct 18050 AATGAGACGTTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATCTTAGACTTGACGTT 18109 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | ||| || || | || || || || ||||| | ||||| || Sbjct 18110 GTCAATCGTGTCCGATGACTCGACCTCAAGCGTGATCGTCTTGCCCGTCAAGGTCTTGAC 18169 Query 34970 AAAGATCTGCATA 34982 || ||||||||| Sbjct 18170 GAAAATCTGCATA 18182 >seq24 Length=629884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| | || |||| || ||||| || ||||| || || Sbjct 219418 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 219359 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||| ||||||||| | || | ||||||||||| ||||| |||||| | Sbjct 219358 AATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 219299 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | ||| || ||| || || | ||| || || || ||||| || |||||||| ||| Sbjct 219298 ATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAG 219239 >seq1 Length=1124325 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 67676 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 67617 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||||||| | || | || |||||||| Sbjct 67616 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 67557 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| || | ||| || || | ||| || || Sbjct 67556 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 67501 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| |||||||| ||||||||||| Sbjct 67500 CTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 67468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629702875080