Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq556 154 1e-32
>seq556
Length=684303
Score = 154 bits (170), Expect = 1e-32
Identities = 279/403 (69%), Gaps = 14/403 (3%)
Strand=Plus/Plus
Query 29988 CACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044
|||||||||||| | ||||| ||||| || || || ||||| || |||
Sbjct 379777 CACGTAAAACTGCGCAAACATG---TGGCAAGGCGGCAGCGCCATCTTCTTCAGGTCGGC 379833
Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTC 30101
|||||||| |||| || ||||||||||| ||| | ||||||| | ||| || ||
Sbjct 379834 CGGGTTCCACGCGCTCATGATGATGCGCCGGTCGTACGGGTTGTGCTTGAGCTTGTGGAT 379893
Query 30102 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30161
||| || |||||| || || ||| |||| |||||| || || ||| |||
Sbjct 379894 CACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCTTTCGCGTCGACGTA 379950
Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30221
||| || |||||||||| |||||||||||||||||| || |||||||| ||| | || |
Sbjct 379951 CTCGGCCCCGAAATGCCGCCACTGGAACCCGTACACTGGGCCCAGGTCGCCCGCCTCGCG 380010
Query 30222 GTGCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30280
||| | |||||| | |||| | | || | || |||||| ||||||||||||| |
Sbjct 380011 GTG-GCCCAGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTTGA 380069
Query 30281 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 30340
| |||| || ||||| || || || || |||||| ||||||||
Sbjct 380070 CGCCCTGTTCTGAGAGGGACAGCGACGACGTCTCGCCCGCGATGAACCATAGCAGCTCTG 380129
Query 30341 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383
| | |||||||||| ||||| | ||| || || ||||| ||
Sbjct 380130 CGAGGACGGCCTTCTGGAAGACGCGCTTTGTGGTCAGGAGCGG 380172
Score = 100 bits (110), Expect = 2e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838
||||||||||| ||||| | |||||| || ||||| ||| |||||||| |||||
Sbjct 379490 GGCTCCCTCTCCAGCTGCACCCTCAGCGCGTCGACGTGGTCCGCATAGACGTGCGCGTCG 379549
Query 29839 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29897
|||| | ||| | || || || || | || | ||||| || ||||||| |||
Sbjct 379550 CCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCACACACGTGCGCGATCATGTGCGT 379608
Query 29898 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 29957
|| || |||||||||||||| || || || || || || |||||||| | || | |||
Sbjct 379609 CAGCAGCGAGTAGCTGGCGATATTGAAAGGGACGCCCAGGCCCATGTCGCAGGAGCGCTG 379668
Query 29958 GTAGAGCTGACA 29969
||| ||||| ||
Sbjct 379669 GTACAGCTGGCA 379680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408612694673405
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |