Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq978 125 2e-23 seq279 113 1e-19 seq723 95.1 4e-14 >seq978 Length=188393 Score = 125 bits (138), Expect = 2e-23 Identities = 197/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| || || ||||| |||||||||||| || || || ||||| ||||| || | Sbjct 143605 CTTGACTAGTCGGCGCTGGATATAACCAGTTTCAGCGGTCTTGACAGCGGTATCGATCAA 143546 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| |||||||| |||| || |||||||| | ||| ||| || || | | | Sbjct 143545 ACCCTCACGACCAGCCATGGCGTGGAAGAAGAACTCAGTGGGTGTCAGACCACGCAGGTA 143486 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 || |||| ||||| ||||| ||||||||||| | ||| || |||||||| ||||| Sbjct 143485 AGAATTCTCGACGAAGCCACGGGCCTCGGGCGAGTAGTCATCTTTCGTAAAGTGAGGCAG 143426 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | || || | ||| |||| || | |||||| |||||| |||||| || | Sbjct 143425 TGTGCGGTACTTGAATCCGAATGGAATCCTCTTTCCCTCAACGACCTGCTGGCCGACTAG 143366 Query 302823 CGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 | | ||||||| || || || | | ||||||||||| Sbjct 143365 AGCAGTCATCTGAGAGATGTTGATGGAAGAACCCTTGGAGCC 143324 >seq279 Length=349471 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTAC---- 133506 ||||| | ||||||||| | || |||||||||||| |||||| |||| Sbjct 263116 AAGAAGGCCGACTGGGCTCTCAAGTGGATCCAGGAC-----CGCGAGTCCACCTACGCCC 263062 Query 133507 -TCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTA 133565 || || ||||| || |||| || |||||||| || |||||||| || ||| ||||| Sbjct 263061 AGCGACTGGTTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGTGGCGCATTCGCCTCTA 263002 Query 133566 TTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTT 133625 |||| ||||| || |||||||| | | ||||| ||| || || ||||| || |||| Sbjct 263001 TTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATTT 262942 Query 133626 CAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | | || |||| || |||||||| || ||| Sbjct 262941 CTCGTGATGAGGGTCTGCACACCGACTTCGCC 262910 >seq723 Length=234800 Score = 95.1 bits (104), Expect = 4e-14 Identities = 114/152 (75%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||| |||||||| |||||||| ||||| ||| | | Sbjct 133090 TGAGCAATTGTCATACGAGATGGAATGGCATGGGGGTTGATGATAATGTCAGGTGTAACA 133149 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TGTTTCCAATAGTTCCCTTT 251955 || || | |||| ||||| || ||||| | ||| || |||||||| |||||| Sbjct 133150 CCTTCGCGACTGAATGGCATGTC---TTCCTGGCGGTAAGTGACACCAATAGTGCCCTTT 133206 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || |||||||||||| ||||| |||||||| Sbjct 133207 TGACCGTGACGAGAAGCAAACTTGTCACCAAT 133238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471799025201945