Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq122 172 7e-37 seq279 149 8e-30 seq112 149 8e-30 seq334 118 1e-20 seq152 105 8e-17 seq667 96.9 4e-14 seq92 93.3 5e-13 seq115 86.0 8e-11 >seq122 Length=94464 Score = 172 bits (190), Expect = 7e-37 Identities = 284/405 (70%), Gaps = 6/405 (1%) Strand=Plus/Plus Query 1573901 GCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGC 1573960 ||| |||| || ||||| || ||| | || ||||| || || |||||| | Sbjct 74535 GCCGGGCATCGGAAAGACGACCAGCGTGCTCTGCCTGGCACGCCAGCTGCTGGGCGACTC 74594 Query 1573961 CGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCG 1574020 | | | ||||| ||||| || |||||||| || || ||||| || ||||||| ||||| Sbjct 74595 CTACAAGGAGGCGGTGCTGGAGCTCAACGCCTCAGATGAGCGAGGAATCGACGTGGTGCG 74654 Query 1574021 CAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGT 1574080 ||| |||||| | ||| |||| | || |||||| |||| ||||||||| | Sbjct 74655 CAACCGGATCAAGGGCTTCGCGCAGAAGAAGGTCACGCTGCCGGCCGGCCGCCACAAGAT 74714 Query 1574081 GATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCAC 1574140 ||||||| |||||||||||| || | ||||||| || |||||||| ||| || || Sbjct 74715 CGTCATCCTGGACGAGGCCGACAGCATGACGTCGGGCGCGCAGCAGGCGCTGAGGCGGAC 74774 Query 1574141 CATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGT 1574200 ||||| | || |||||||||||||||||||| | ||||||||| || | | | Sbjct 74775 GATGGAGATCTACTCCAACACGACGCGCTTTGCCTTCGCGTGCAACCAATCCAACAAGAT 74834 Query 1574201 CATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTTGTGCGCCTGGGTGACGCC 1574258 ||||||| | || | |||||| || || || ||||| | | ||| ||| |||| | Sbjct 74835 CATCGAGCCACTGC--AGTCGCGGTGTGCGATCCTGCGGTACGCGCGGCTGACAGACGGC 74892 Query 1574259 CAGATACGCGCGCGCCT-ATGCGATATTGTCGCCGCCGAAAAGGT 1574302 ||| | |||||| |||| | || ||| ||||| ||||| Sbjct 74893 CAGGTGGTGAAGCGCCTGATGC-AGATCATCGAGGCCGAGAAGGT 74936 >seq279 Length=349471 Score = 149 bits (164), Expect = 8e-30 Identities = 189/257 (74%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| ||| || |||||||||||||| |||| ||||| Sbjct 262614 GCCTTCTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAGATG 262673 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||| | || |||||| ||| ||| || |||||| Sbjct 262674 TTCTCCATGAAGTCGAAGGGGTTCGACGACTTGTAAACCTTCTCGTTGCCCAGAGCGA-- 262731 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || || |||||||| ||||||||||||||||| ||||||| || ||||||||||| Sbjct 262732 CCAGGAGACGGTCGGCAACAAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGA 262791 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 ||| || ||||| | |||| ||| ||||| ||||| || |||| |||||| || Sbjct 262792 GGAGGGCGCATGGCAGAGCCTCGGTCAAGAACTCCTTCTCAATGGCGACAGCCTCGGTGA 262851 Query 868929 TGATCTGCCTGGGCACG 868945 |||| | ||||| |||| Sbjct 262852 TGATGT-CCTGGACACG 262867 Score = 104 bits (114), Expect = 3e-16 Identities = 127/173 (73%), Gaps = 9/173 (5%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| ||||| ||||||||||| |||||||||||||| || || | | | Sbjct 262950 TCGTTGGAGAAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCG 263009 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 || ||| ||| ||||||||||||||||| || ||| | | || |||| ||| || Sbjct 263010 AATGCGCCACTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAACCAGTCGCTGGGCGTAG 263069 Query 869321 GTG---TCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 ||| ||| || || | ||||||||| | |||||||||||||| || Sbjct 263070 GTGGACTCGCGGTCC------TGGATCCACTTGAGAGCCCAGTCGGCCTTCTT 263116 >seq112 Length=900038 Score = 149 bits (164), Expect = 8e-30 Identities = 109/127 (86%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | |||||||| ||||||||| | ||||||||| | ||||| ||| | || Sbjct 490949 CTCTTCGAGATCATCCTCGCAGCCAACTACATGGACATCAAGGCGCTGCTTGATGTCGGC 491008 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | |||||||||||||||||||||||||| || |||||||| |||||||| ||| Sbjct 491009 TGCAAGACGGTGGCCAACATGATCAAGGGCAAGTCCCCAGAGGAGATTCGCAAGACGTTT 491068 Query 1592288 AACATCA 1592294 ||||||| Sbjct 491069 AACATCA 491075 >seq334 Length=742376 Score = 118 bits (130), Expect = 1e-20 Identities = 320/488 (66%), Gaps = 15/488 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| ||||| || ||||| || || ||| || || Sbjct 395683 CTGGTCGACGTATCGGGCGGTGTTGTTGAAGACCCGCAGCATTGGGGTGATGCCATTAGA 395742 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||||| ||| || | |||| || | || Sbjct 395743 GGTACCGTTGGTGCCAGCGATGTATGAGCCGGTGGCACGGATGCGGTGCACGTTCAGACC 395802 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| ||||||||| | || || || || ||||| || |||||||| Sbjct 395803 AATTCCACCCGCCATCTTGGAGATCATAGCACAAGTCTTTAGGGTGTCATAAATGCCCTC 395862 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| ||||| ||||| || || || || || | ||||| Sbjct 395863 AATGCTGTCCTCCTTCATGTCGACGAGGAAGCATGATGACAGCTGGGGCTGGGGAGTGCC 395922 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || ||||| | ||||| | || ||||| |||| ||||| || ||| || Sbjct 395923 AGCATTGAACAATGTGGGGGAGGCATGTGTGAAGAACTTGTTTGACATCAGGTTGTATGT 395982 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | | || | | | ||||||| || ||| || |||| ||||| Sbjct 395983 CTCAATGACCCTTTCGA---CATCGTC----TC------CCC--AGATACCGACAGCGAC 396027 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| ||| ||||||||||| || || | |||| ||||| || Sbjct 396028 ACGCATGATCATGTGCTGTGGCCGCTCGACAACTTTACCATCGAGCTTGAGGAGGTATGA 396087 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 || || |||| ||| ||| || || || |||| || ||||||| ||||| Sbjct 396088 ACGCTCCAGGGTCTTGAAGCCGAAATATTGGTAGCCAAAGTCACGGTCGTAAACAATGGC 396147 Query 1630545 GGCGTCGA 1630552 | ||||| Sbjct 396148 CGAGTCGA 396155 >seq152 Length=84808 Score = 105 bits (116), Expect = 8e-17 Identities = 194/280 (69%), Gaps = 7/280 (3%) Strand=Plus/Plus Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGC 1852099 ||| ||||||||||| || |||||||| ||||||||||| || ||||||||| Sbjct 59072 AGGTCGATCTTGGAGTTGGGGTCGCTGGCCGACATCTTGCCGCCCTGC---AGGCCCGGC 59128 Query 1852100 ACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGC 1852159 || | ||||| | | ||| ||| | ||| || || || |||||| || Sbjct 59129 ACCATGGGGTTCATGATGTGTGCGCGTTGCCGGTACCCCAGCTTCGGCAGCCACTCCTTT 59188 Query 1852160 GCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 1852219 ||| | || | |||||||||||| ||||| ||||| | || ||||| |||| | Sbjct 59189 GCAGCTGTGAACAGCTTGCGCTGGTCCACGCCGCCGAACTGCACATCCACGTCCAGGTAC 59248 Query 1852220 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTT-GCGGTC 1852278 |||||||| ||| |||||| || |||||| |||| | || | | ||| || || Sbjct 59249 TGCTCGTCCAGGACCTGCAGGATCGGGTACAGCAGCCCGGACAAAGGGGCGTTGGCCGT- 59307 Query 1852279 CATCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGC 1852316 | |||||| |||| |||| |||||| || ||| ||||| Sbjct 59308 CTGCTTGACGACCTCAGCGCCGGCCTTCTTGGCGTCGTGC 59347 >seq667 Length=656741 Score = 96.9 bits (106), Expect = 4e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||| || ||| | | ||||| || | |||||| || || Sbjct 589971 CCGCGCCCCTCCCACGCCGACTGGACTTACCTTGAGAAGTATGGTACCAAGGCCTCCTCT 589912 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 || || |||||| ||||||||||| | ||||||||||||||||| || ||| Sbjct 589911 GGGGGCGGCCGGAGCAGCGCCCGCGAGACTATTGCCCGCGTCGCCGCCGGCGCTGTTGCC 589852 Query 18478 GAGAAATGGCT 18488 ||||||||||| Sbjct 589851 GAGAAATGGCT 589841 >seq92 Length=107393 Score = 93.3 bits (102), Expect = 5e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 ||||||||| ||| ||| |||| ||||||||||| |||||||||| || ||||| | Sbjct 9731 GCCTCGGTGGCGACGCGCTCGAAGATGTCGTTGACGAACGAGTTCAGGATGGACATGGCA 9672 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||| || ||||||||| ||||||||||| || Sbjct 9671 CGGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 9631 >seq115 Length=97091 Score = 86.0 bits (94), Expect = 8e-11 Identities = 137/191 (72%), Gaps = 7/191 (4%) Strand=Plus/Minus Query 1726966 GTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGAC 1727025 ||||| || |||||| || |||||||||||| |||||||| ||||| ||||| |||| Sbjct 33328 GTCGACATCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGAG 33269 Query 1727026 ATAGGCGCGCATGACCACGCAAAGCGCGTCGCC-GACCTCGTCTCGGACAAAGGCGCGCA 1727084 ||||| ||||||| ||||| || |||||| || | | ||||||| | | | Sbjct 33268 GTAGGCACGCATGATGACGCAGAG---GTCGCCGGATAGCCTGTCGGACAGCTCCTTG-A 33213 Query 1727085 GGC-GTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATA 1727143 | | ||||| | || |||| | ||| || |||||||| || || || || |||| Sbjct 33212 GCCTGTCGG-CGTACTCGAGGGCGGTGGCAGGGTCGTGGATGGAGCAGGGGCCGACGACG 33154 Query 1727144 ACCAGCAGCCG 1727154 || ||||| || Sbjct 33153 ACGAGCAGGCG 33143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107058366287245