Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq334 291 8e-74
seq279 152 5e-32
seq1 134 1e-26
seq512 123 2e-23
seq24 102 8e-17
>seq334
Length=742376
Score = 291 bits (322), Expect = 8e-74
Identities = 1131/1745 (65%), Gaps = 53/1745 (3%)
Strand=Plus/Plus
Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTTATCTTCATC 148118
|| |||||||| || ||||||||||| ||||| | ||||| ||| | | |||
Sbjct 394433 TGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAATG-GTCCTCTGAGAG--ATC 394489
Query 148119 TCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACC 148178
|||||| | |||||||| || |||||||| | | || |||| ||| ||| |
Sbjct 394490 TCCCAGACGGTCTTGTAGAGGGCCTTGATATCAGCCGGGATGCTAGGAATGTTCTGAATG 394549
Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238
|| || | || | || | || ||| | || | | | | |||||| ||
Sbjct 394550 GAACCATCCTCGGCGATGATACGGTTCTTCATGGCCTCAGACCACAAGCCGAGCTCTGTC 394609
Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298
|| || || || | | || || ||||| |||||||| |||||||| || ||| |
Sbjct 394610 AGATCCCTGAGGAGCCAAGGGTTGACGACCTGGAACTCGCCAGCGAGCACACGTCGCTGG 394669
Query 148299 TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTT 148358
|| | |||| || | || ||||| |||| |||||||||| || |||| ||||
Sbjct 394670 TAGATGTTGGAGGTGTATGGCTCAAAGCACTCATTGTTGCCCAGGATTTGCGACGTCGAA 394729
Query 148359 GCCGTGGGCATGTACGCTACCAGCAGCGAG---TTGCGCAAACCGCGATTTTTTATTTTG 148415
|| |||||||| | | |||||| | || ||||| | ||| | || || ||
Sbjct 394730 GCAGTGGGCATT---GGTGCCAGCAACAAGCTGTTGCGAACACCAGTCTCCTTGATCTTC 394786
Query 148416 CGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGC 148475
|||||| || ||||||||||||| || || | || |||||||||||| |||||
Sbjct 394787 TCCTTCAGTGCATCCCAGTCCCAGAGGTCGGAGGGCTTGACATTCCACATGTCGAACTGC 394846
Query 148476 AGAATGCCGCGGCTAG-CGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534
|| ||||| || || |||||||||||||||| | |||| || || | | || ||
Sbjct 394847 AGGATGCC-TTGCGAGACGGGGCTGCCCTCGTATGTCTTGTAGGGGCCCTCCACCTTGGC 394905
Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594
| || | || ||| || ||| ||| || |||||| || ||| |||| ||
Sbjct 394906 AATGTCACTTGATGCAGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAG 394965
Query 148595 CAGCGCCGCCGACT-CGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGC 148653
| | | | | || | ||| | || || ||||| || || ||||||||||| |
Sbjct 394966 C-TCACGGGCCTCTGGGGAGTCGAAAGGTATGCGCAGTGCCAAGAATGCGTCGGCAAGAC 395024
Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCG 148713
|||| || || || ||||| || ||||| |||||| | | || || || ||
Sbjct 395025 CCTGAACACCGACACCAATAGGTCGGTGCCGCATGTTGCTGTTGTAGGCCTCCTTGACCG 395084
Query 148714 GATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGTAA--TTC 148770
| ||||||||| || ||||||||| ||||| ||||| || || |||| |||| |
Sbjct 395085 GGTAGTGGTTGACATCAATGATCTTGTTCAAG-TTGCGGACGACGACCTGGGTAACCTCG 395143
Query 148771 TGC----GCAGCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATA 148826
||| || | || | | || ||||| | | | || | || || ||
Sbjct 395144 TGCAACTGCTGGAAGTTGTAGCAGTTGTTGTCGTAGTCAACATATGCGGGCAGAGCAATG 395203
Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886
||||| | |||||||| || |||||| ||||| |||||| | |||||| | |||
Sbjct 395204 GAGGCCAAGTTGCACACCGCGACCTCATCTGGGGCAGAGTACTCAATGATCTCAGTGCAA 395263
Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946
|||||| || | ||| |||| |||||| || |||||||| | |||| ||||
Sbjct 395264 AGATTGGAGCTTCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTCCGGTTGGCGTGGTCC 395323
Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCA 149004
|||||||||||| | || |||||| || ||| | || | ||| | | || |
Sbjct 395324 TTGTACAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCGAGAATGGCATACCAT--A 395381
Query 149005 GGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTAT 149058
| | ||| || || ||||| | |||||||||| |||||| |||
Sbjct 395382 GCTTCTGGGCCTTCATGGTCTTGCGAC----CACGACCCTCCTTCTCGTACTGCTCGTAG 395437
Query 149059 ACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACA 149118
| ||| ||| ||| |||| |||||||| ||| |||| || || |||| || |||||||
Sbjct 395438 AGAGC--CTCAAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGACACTCGTTAGGGCACA 395495
Query 149119 TGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCG 149178
| || | ||| | |||| | | || |||||||| || |||||||| | |||||| |
Sbjct 395496 TCAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAAAAGATCGGGAATCCAGAGGG 395555
Query 149179 CGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC-GCCCATG-TTGCGGCGCAGGTTGAG 149236
| | || || || | || | | ||| | | || || || |||||||| ||
Sbjct 395556 CAAGGAAAAGATCACG-GGCTCGGA-TCTCCTCCTTACCGTGATTCTTGCGCAGGTCAAG 395613
Query 149237 CACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC-- 149294
| ||| | || |||||||| ||||||| ||| | |||| || || |||
Sbjct 395614 AAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATAGCGAAGGCACCGGGACGCTT 395673
Query 149295 -TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAAT 149353
||||| ||||||||||||| || | ||||||| || || || | ||| || ||
Sbjct 395674 GTTGCCACCCTGGTCGACGTATCGGGCGGTGTTGTTGAAGACCCGCAGCATTGGGGTGAT 395733
Query 149354 GCCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCA 149412
|||| | | || ||||| || ||| ||| |||| || || | |||||
Sbjct 395734 GCCATTAGAGGTACCGTTGGTGCCAGC-GATGTATGAGCCGGTGGCACGGATGCGGTGCA 395792
Query 149413 CGTTGACGCCGATGCC-GCCGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGA 149470
|||| | || || || ||||| | ||| ||||| || | |||| || ||
Sbjct 395793 CGTTCAGACCAATTCCACCCGCCAT-CTTGGAGATCATAGCACAAGTC-TTTAGGGTGTC 395850
Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530
|| |||||||| |||||||| ||||||| | || ||||| || ||| || ||
Sbjct 395851 ATAAATGCCCTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCATGATGACAGCTGGGG 395910
Query 149531 AAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCAT 149590
| ||||| || ||||| |||||| ||| ||||| || | || | |||
Sbjct 395911 CTGGGGAGTGCCAGCATTGAACAATGTGGGGGAGGCATGTGTGAAGAACTTGTTTGACAT 395970
Query 149591 CATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCG 149650
|| | ||| | ||| | || | || | || || || ||| || | ||||| ||
Sbjct 395971 CAGGTTGTATGTCTCAATGACCCTTTCGACATCGTCTCCCCAGATACCGACAGCGACACG 396030
Query 149651 CATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTT 149710
||| | ||| ||||| || ||||| | ||||| | | ||||| | |||
Sbjct 396031 CATGATCATGTGCTGTGGCCGCTCGACAACTTTACCATCGAGCTTGAGGAGGTATGAACG 396090
Query 149711 TTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGC 149770
|| || |||||| |||| || || | |||| ||||||| ||| ||| ||||||| |
Sbjct 396091 CTCCAGGGTCTTGAAGCCGAAATATTGGTAGCCAAAGTCACGGTCGTAAACAATGGCCGA 396150
Query 149771 GTCGA 149775
|||||
Sbjct 396151 GTCGA 396155
>seq279
Length=349471
Score = 152 bits (168), Expect = 5e-32
Identities = 354/528 (67%), Gaps = 33/528 (6%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| || ||||| || |||||||| ||||| || ||||| | | || ||||| |
Sbjct 262619 CTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAGATGTTCTC 262678
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTT--AAAGTATTTCGGCTGGCCCAACTGTACGAGC 120468
||| || ||||| ||||| || || ||| | ||| | ||||| || ||
Sbjct 262679 CATGAAGTCGAAGGGGTTCGACGACTTGTAAACCTTCTCG--TTGCCCAGAGCGACCAGG 262736
Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528
|| ||||| || |||||||| ||||||| |||| | | ||||||||| || |
Sbjct 262737 AGACGGTCGGCAACAAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGG 262796
Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588
|| |||| ||| || || ||||||||||||||| | || ||||| ||| |||
Sbjct 262797 GCGCATGGCAGAGCCTCGGTCAAGAACTCCTTCTCAATGGCGACAGCCTCGGTGATGATG 262856
Query 120589 GCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTC----GGT---AGTACAG 120641
| ||| | || |||| || || | |||| ||| || ||||
Sbjct 262857 TC---------CTGGACACGCTGCTTG-CTTGGACG---GTTCCTCAGGTGAGAGAACAG 262903
Query 120642 G---CACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698
| || || ||||| |||||||| ||||| || || || || ||||||||| || ||
Sbjct 262904 GAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAAATGAGCTCGTTGGAGAAGGT 262963
Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758
|||||| ||||||| ||| | |||||| |||| || | ||| || ||| ||
Sbjct 262964 CAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAATGCGCCACTGAA 263023
Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818
||| | |||||| ||| || ||||| |||| |||| ||| | || | || ||
Sbjct 263024 GAAGATGCCCTCGACGGCAGCGAAGGCAACCAGTCGCTGGGCGTAGGT---GGACTCGCG 263080
Query 120819 GTC---GATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863
||| ||||||||| | ||||| |||||||| ||||| | ||||||
Sbjct 263081 GTCCTGGATCCACTTGAGAGCCCAGTCGGCCTTCTTGCGGATGCACGG 263128
>seq1
Length=1124325
Score = 134 bits (148), Expect = 1e-26
Identities = 149/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| | ||| ||||||||||||||||||
Sbjct 67665 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 67606
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || ||||||||||| || || |||||||||||||| |||||| |||
Sbjct 67605 GGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGACTT 67546
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| || | ||||| || ||||| || || ||
Sbjct 67545 GACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 67486
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 67485 CTTCACGAAGATCTGCATG 67467
>seq512
Length=287951
Score = 123 bits (136), Expect = 2e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||| ||||| || || || ||||| ||| | ||| ||||||||||||
Sbjct 18434 ATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 18493
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| || | || || ||||||||||| || |||||||| |||||||| ||||||
Sbjct 18494 CTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 18553
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||||| | || | || |||| || ||| || || | ||||| ||| ||||| ||
Sbjct 18554 GGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCTGT 18613
Query 133637 CAGAGTTTTTACGAAAATCTGCATGG 133662
|| || || ||||| ||||||||||
Sbjct 18614 GAGGGTCTTCACGAAGATCTGCATGG 18639
Score = 118 bits (130), Expect = 1e-21
Identities = 119/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||||||||| || || | || || ||||||||||| || |||||||| ||||||
Sbjct 18255 TCCTCGAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 18314
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | ||||| | || ||| || |||| ||| | |
Sbjct 18315 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATG 18374
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| |||||||| || ||||| ||||||||
Sbjct 18375 GTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 18409
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || | ||||||||| ||| ||||||| || |||||||| || || || || ||||||
Sbjct 18027 TCTTCCAACTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGTGGAATTCCCTCCTTG 18086
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||||| ||||| | |||| |||||| | | ||| || || | ||||
Sbjct 18087 TCCTGAATCTTAGACTTGACGTTGTCAATCGTGTCCGATGACTCGACCTCAAGCGTGATC 18146
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| |||| || || ||||||||||||||
Sbjct 18147 GTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 18181
>seq24
Length=629884
Score = 102 bits (112), Expect = 8e-17
Identities = 132/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531
||||| || ||||| ||| || ||| | | | ||||| ||||||||||| ||| | ||
Sbjct 219418 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCAAGCTGCTTGCCGGCGAAGAT 219360
Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591
| ||||||||||| || || ||||| |||||||| |||||| ||||| | ||
Sbjct 219359 CAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTC 219300
Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651
| ||||| | || |||||| || | ||||| || ||||| ||||| || || |||||
Sbjct 219299 GATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 219240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483414847881400
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