Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq122 178 2e-38
seq279 156 6e-32
seq334 113 6e-19
>seq122
Length=94464
Score = 178 bits (196), Expect = 2e-38
Identities = 323/473 (68%), Gaps = 0/473 (0%)
Strand=Plus/Minus
Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911
||| |||| || || ||| | | |||||||| ||||| || |||||| | |||||||
Sbjct 74894 TGGCCGTCTGTCAGCCGCGCGTACCGCAGGATCGCACACCGCGACTGCAGTGGCTCGATG 74835
Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971
| | | || |||||| || | |||||| |||||||| |||| | | |||||
Sbjct 74834 ATCTTGTTGGATTGGTTGCACGCGAAGGCAAAGCGCGTCGTGTTGGAGTAGATCTCCATC 74775
Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATG 333031
||| || || ||||| || || ||| ||| | || |||||||||||| ||||||| |
Sbjct 74774 GTCCGCCTCAGCGCCTGCTGCGCGCCCGACGTCATGCTGTCGGCCTCGTCCAGGATGACG 74715
Query 333032 ATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTG 333091
||||||||||| ||| |||||| ||| | ||| ||| | ||||| |||
Sbjct 74714 ATCTTGTGGCGGCCGGCCGGCAGCGTGACCTTCTTCTGCGCGAAGCCCTTGATCCGGTTG 74655
Query 333092 CGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCG 333151
||||| ||||| | || ||||| || || |||||||| || ||||| ||||| | | |
Sbjct 74654 CGCACCACGTCGATTCCTCGCTCATCTGAGGCGTTGAGCTCCAGCACCGCCTCCTTGTAG 74595
Query 333152 GCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGC 333211
| | |||| || ||| |||||||| | ||| || ||||| || |||| |||
Sbjct 74594 GAGTCGCCCAGCAGCTGGCGTGCCAGGCAGAGCACGCTGGTCGTCTTTCCGATGCCCGGC 74535
Query 333212 GGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCA 333271
|| | | || || ||||||||||| || ||| | ||||||| |
Sbjct 74534 ATGCCGCTGATGATGACGTGCGGCATGTTGCCATCTTTGGCTATGATCTTGAGGCGCTCG 74475
Query 333272 ACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTC 333324
| || | |||| ||||| ||||||||||| | || || ||||| || ||
Sbjct 74474 ATGGTCTCTACGTTTCCGACGATGTCGTCGAGGAAGATGGGACGGTATTTCTC 74422
>seq279
Length=349471
Score = 156 bits (172), Expect = 6e-32
Identities = 218/301 (72%), Gaps = 5/301 (2%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||| || || ||||| ||||| ||||||||| |||| |
Sbjct 263523 GATCTGGCAGATGTAC-AAGAAGCATGAAGCTTCCTTCTGGACTGCCGAGGAGATCGATC 263465
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891
|| | ||| | | ||||| ||| ||| ||||||||| || | ||| ||
Sbjct 263464 TCTCCAAGGACCTGCACGACTGGAGCAACCGCCTGACCGACGACGAACGATACTTCGTCT 263405
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| |||||||||| || ||| || ||||| ||||| ||||||||||| |
Sbjct 263404 CCCACATCCTCGCCTTCTT-CGCTGCTTCAGATGGAATCGTCAACGAGAACCTGGTGGAG 263346
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | ||||| || | |||||||| || | || ||||| |||||||||
Sbjct 263345 CGCTTCAGCGGCGAGGTTCAGATCCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATCATG 263286
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || |||||||||||||| || |||||||| || |||||||||||| ||||||| |||
Sbjct 263285 ATGGAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACCTACATCAAGGAGCCG 263226
Query 1456072 G 1456072
|
Sbjct 263225 G 263225
Score = 120 bits (132), Expect = 4e-21
Identities = 190/266 (71%), Gaps = 5/266 (2%)
Strand=Plus/Minus
Query 1456510 CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569
|||| ||| | | |||||| |||||| |||| || ||||| ||||| | | |||| |
Sbjct 262867 CGTGTCCAGG-ACATCATCACCGAGGCTGTCGCCATTGAGAAGGAGTTCTTGACCGAGGC 262809
Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629
||||| || ||| ||||||||||| ||| | |||||| |||||||| | | |||
Sbjct 262808 TCTGCCATGCGCCCTCCTCGGCATGAACTCCAAC-CTCATGAAGCAGTACATCG-AGTTT 262751
Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689
|| |||||||| || || | || || ||| | |||||| ||| | || | |||||
Sbjct 262750 GTTGCCGACCGTCTCCTGGTCGCTCTGGGCAAC-GAGAAGGTTTACAAGTCGTCGAACCC 262692
Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749
||| | |||||| ||||| |||| |||||||||||||| || ||| || ||
Sbjct 262691 CTTCGACTTCATGGAGAACATCTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGT 262632
Query 1456750 -GGCGAGTACGCCAAGGCCGGCGTCA 1456774
|| || ||| |||||||| ||||
Sbjct 262631 CGGTGACTACCAGAAGGCCGGTGTCA 262606
Score = 86.0 bits (94), Expect = 9e-11
Identities = 115/156 (74%), Gaps = 7/156 (4%)
Strand=Plus/Minus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCC--TCGACACTTTGCCGA 1456180
|| |||||||||||||| | ||||||||| | ||| || || || || ||| |
Sbjct 263116 AAGAAGGCCGACTGGGCTCTCAAGTGGATCCA---GGACCGCGAGTCCAC-CTACGCCCA 263061
Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239
||| || || | ||| || || |||||||||||||| ||| ||| ||| | | ||
Sbjct 263060 GCGACTGGTTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGTGGCGCATTCGCCTCTAT 263001
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|| |||||||||||||| ||||||||||| || ||
Sbjct 263000 TTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCT 262965
>seq334
Length=742376
Score = 113 bits (124), Expect = 6e-19
Identities = 328/504 (65%), Gaps = 21/504 (4%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| ||||| | ||||| ||| ||| |||||||||||| || ||
Sbjct 396168 CACAAGGAGGAGTTCGACTCGGCCATTGTTTACGACCGTGACTTTGGCTACCAATATTTC 396109
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATT---GTCGTCGAG 259798
|| | |||| || || || ||||| ||| || |||| | || ||||||
Sbjct 396108 GGCTTCAAGACCCTGGAGCGTTCATACCTCCTCAA---GCTCGATGGTAAAGTTGTCGAG 396052
Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858
||||| ||| | ||| ||||||||||||| | || | |||| | ||| |||||
Sbjct 396051 CGGCCACAGCACATGATCATGCGTGTCGCTGTCGGTA--TCTGGGGA-GACGATGTCGAA 395995
Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCA 259918
| | | ||| || ||| | ||||| | |||| |||||
Sbjct 395994 AGGGTCATTGAG------------ACATACAACCTGATGTCAAACAAGTTCTTCACACAT 395947
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
|| | ||||| | || ||||| ||||| || | || ||| || || ||||| ||
Sbjct 395946 GCCTCCCCCACATTGTTCAATGCTGGCACTCCCCAGCCCCAGCTGTCATCATGCTTCCTC 395887
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| |||||||||| || || |||||||| |||||||| || ||| || || |
Sbjct 395886 GTCGACATGAAGGAGGACAGCATTGAGGGCATTTATGACACCCTAAAGACTTGTGCTATG 395827
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
||||||||| ||| || || || ||| | || ||| | || ||| | ||| |
Sbjct 395826 ATCTCCAAGATGGCGGGTGGAATTGGTCTGAACGTGCACCGCATCCGTGCCACCGGCTCA 395767
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
||| | || ||||||||||| || || ||| | || ||||| || || || |||
Sbjct 395766 TACATCGCTGGCACCAACGGTACCTCTAATGGCATCACCCCAATGCTGCGGGTCTTCAAC 395707
Query 260159 GACACGGCGCGCTACGTCGACCAG 260182
|||| || || ||||||||||||
Sbjct 395706 AACACCGCCCGATACGTCGACCAG 395683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177716194939570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |