Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 2e-24
seq512 122 9e-23
seq24 84.2 2e-11
>seq1
Length=1124325
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || ||||| || ||||| ||||| || |||||||||||| | |||| |
Sbjct 67685 AGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 67626
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| |||||||| ||||| || || |||| ||||||||| || || || ||||||||
Sbjct 67625 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCC 67566
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | |||||||| || ||||| || || ||
Sbjct 67565 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 67506
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || | || || ||||| || |||||
Sbjct 67505 ATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 67468
>seq512
Length=287951
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || ||||| || || |||||||| || ||||||||||||
Sbjct 18183 CCACCACGGAGGCGGAGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 18242
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || |||||||| || || ||||| |||| ||||||||| || || ||
Sbjct 18243 AGGGTTCGCCCATCCTCGAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGG 18302
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| ||| | ||||| || || || ||
Sbjct 18303 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCTGAGGACTCGACC 18362
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| |||||||| || || || | ||| || ||||| || |||||
Sbjct 18363 TCGAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 18409
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
||||| || || || || ||||||||||||||||||||| | |||| | ||| |||
Sbjct 18429 ACGAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 18488
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| ||||| || | |||||||| || || || ||||| || || || ||
Sbjct 18489 AGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 18548
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || ||||| ||| | || ||||| || || || || || || ||||| ||
Sbjct 18549 ATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTG 18608
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || | || || ||||| || |||||
Sbjct 18609 CCTGTGAGGGTCTTCACGAAGATCTGCAT 18637
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| ||||| ||||| |||||||| || |||||||||||
Sbjct 17955 CCACCACGGAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAT 18014
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || || | ||| ||||| || ||||| | ||| ||||| || || ||
Sbjct 18015 AGCGTCCGGCCATCTTCCAACTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGTGGA 18074
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || ||||| ||| | ||||| || || || ||
Sbjct 18075 ATTCCCTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATCGTGTCCGATGACTCGACC 18134
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || || || || || || || |||||||| |||||
Sbjct 18135 TCAAGCGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 18181
>seq24
Length=629884
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || |||||||||||| | |||| | || || ||||| ||||| || || |
Sbjct 219420 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 219361
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
|||| |||||||| || || || ||||| || || || || || || ||||| ||
Sbjct 219360 TCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 219301
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | ||||| || || ||||| || || || || || || || || | || || ||||
Sbjct 219300 CGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGA 219241
Query 134704 A 134704
|
Sbjct 219240 A 219240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505392177282200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |