Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq512 147 7e-30
seq734 118 3e-21
seq978 104 7e-17
>seq512
Length=287951
Score = 147 bits (162), Expect = 7e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| || ||||||||||| || || || || || || ||
Sbjct 18179 CATACCACCACGGAGGCGGAGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTC 18238
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||||||||| || || || |||||||||||||| ||||| ||||| |||||
Sbjct 18239 GGAGAGGGTTCGCCCATCCTCGAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGG 18298
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || ||||| || || | || || | ||
Sbjct 18299 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCTGAGGACTC 18358
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || |||| ||||| || || || || || || || ||||||||
Sbjct 18359 GACCTCGAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 18409
Score = 134 bits (148), Expect = 4e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | || || || || || || || || || || || || || ||||||
Sbjct 17955 CCACCACGGAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAT 18014
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| || || |||||||| | || || ||||| || || ||||||||||| || || |||
Sbjct 18015 AGCGTCCGGCCATCTTCCAACTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGTGGA 18074
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
||||| || || |||||||| |||| || || || ||||||| || |||| || ||
Sbjct 18075 ATTCCCTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATCGTGTCCGATGACTCGACC 18134
Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || || | || || || |||||||||||
Sbjct 18135 TCAAGCGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 18181
>seq734
Length=233485
Score = 118 bits (130), Expect = 3e-21
Identities = 473/737 (64%), Gaps = 21/737 (3%)
Strand=Plus/Minus
Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256
||||| | || || ||||| ||||| || || |||||||| | ||| | | |||| |
Sbjct 196517 CCGCTGTTGGTATTGATTTGGGTACCACCTACTCTTGTGTGGGTGTCTTCCGTGATGACC 196458
Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316
| | || || || || || || || || ||| | || || || || | || || || |
Sbjct 196457 GCATTGAGATCATCGCCAACGACCAGGGAAACCGGACCACCCCTTCCTTTGTCGCTTTCA 196398
Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376
|||| |||||||| |||| || ||| | || || || || | || || || | |
Sbjct 196397 CCGACACTGAGCGCCTGATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCACA 196338
Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTT-----TCTGACAAATCTA 349430
| || || || ||||| ||||| | ||||| | ||||| ||||| ||
Sbjct 196337 ACACCGTCTTCGATGCGAAGCGGTTGATTGGCCGCAAGTTCCAGGACTCTGAGG--TC-- 196282
Query 349431 CACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAA 349490
|| | || | || || || || || | | | || | ||| || | || || |
Sbjct 196281 --CAGGCCGACATGAAGCACTTCCCCTTCAA-GATCATCGAGAAG--GGCGGCAAGCCCA 196227
Query 349491 TTATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCAT 349547
|| |||||||| | || || || || || || || |||| || || ||||| |
Sbjct 196226 ACATCGAGGTTGAGTTCAAGGGCGAGACCAAGACC---TTCACCCCAGAGGAGATTTCCT 196170
Query 349548 CAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTG 349607
| ||||| | || ||| || | ||||| | || | |||| || || |
Sbjct 196169 CCATGGTCCTCACCAAGATGCGTGAGACCGCTGAGTCCTACCTGGGTGGCACCGTCAACA 196110
Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667
| ||||| || || || || ||||| || || || | |||||| ||||| || || |
Sbjct 196109 ACGCTGTCATCACGGTCCCCGCCTACTTCAACGACTCTCAGCGTCAAGCAACCAAGGACG 196050
Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727
|||| ||||| || | || ||| | | || || || || || ||||| || || |
Sbjct 196049 CTGGTCTTATTGCTGGCCTGAACGTTTTGCGTATCATCAACGAGCCTACTGCCGCGGCCA 195990
Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAG 349787
|||| ||||| || || || | | || || || | || || || || | |
Sbjct 195989 TTGCCTATGGTCTCGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGACCTGG 195930
Query 349788 GTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAG 349847
||||||||||||| ||||| || || || || | || ||||| || || || || ||
Sbjct 195929 GTGGTGGTACTTTCGATGTCTCGCTCCTGACCATCGAGGAGGGTATCTTCGAGGTCAAGT 195870
Query 349848 CAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATT 349907
| || || ||||| || || || ||||| || || || || || || || || || |
Sbjct 195869 CCACCGCCGGTGACACTCACCTGGGTGGCGAGGACTTCGACAACCGCCTGGTCAACCACT 195810
Query 349908 TTGTTAAAGAATTTAAG 349924
|||| || || || |||
Sbjct 195809 TTGTCAACGAGTTCAAG 195793
>seq978
Length=188393
Score = 104 bits (114), Expect = 7e-17
Identities = 183/267 (69%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 378168 GTTTCTTACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCG 378227
||||| ||||| |||||| | || | | || |||| || || | ||||| ||
Sbjct 143650 GTTTCGAACAGTGCCATCATACTTCGCCGTGACGTCCTCTAGCGCCTTGACTAGTCGGCG 143591
Query 378228 AGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACC 378287
||||||||||||| | || || || || ||||| || ||||| |||||||| |
Sbjct 143590 CTGGATATAACCAGTTTCAGCGGTCTTGACAGCGGTATCGATCAAACCCTCACGACCAGC 143531
Query 378288 CATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAA 378347
||| || |||||||| || ||||| || || || |||| | | ||| |||| | ||
Sbjct 143530 CATGGCGTGGAAGAAGAACTCAGTGGGTGTCAGACCACGCAGGTAAGAATTCTCGACGAA 143471
Query 378348 TCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAA 378407
|| | || | ||||| | |||| ||| ||| | ||||| | ||| || | || ||
Sbjct 143470 GCCACGGGCCTCGGGCGAGTAGTCATCTTTCGTAAAGTGAGGCAGTGTGCGGTACTTGAA 143411
Query 378408 CCCATATGGAATTCGTTTTCCATCAAC 378434
|| ||||||| | ||||| |||||
Sbjct 143410 TCCGAATGGAATCCTCTTTCCCTCAAC 143384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515235277015955
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |