Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq512 147 7e-30 seq734 118 3e-21 seq978 104 7e-17 >seq512 Length=287951 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || ||||||||||| || || || || || || || Sbjct 18179 CATACCACCACGGAGGCGGAGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTC 18238 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||||||||| || || || |||||||||||||| ||||| ||||| ||||| Sbjct 18239 GGAGAGGGTTCGCCCATCCTCGAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGG 18298 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 18299 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCTGAGGACTC 18358 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| ||||| || || || || || || || |||||||| Sbjct 18359 GACCTCGAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 18409 Score = 134 bits (148), Expect = 4e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || || || || || || || || || || || |||||| Sbjct 17955 CCACCACGGAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCAGAT 18014 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || |||||||| | || || ||||| || || ||||||||||| || || ||| Sbjct 18015 AGCGTCCGGCCATCTTCCAACTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGTGGA 18074 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||| || || |||||||| |||| || || || ||||||| || |||| || || Sbjct 18075 ATTCCCTCCTTGTCCTGAATCTTAGACTTGACGTTGTCAATCGTGTCCGATGACTCGACC 18134 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || | || || || ||||||||||| Sbjct 18135 TCAAGCGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 18181 >seq734 Length=233485 Score = 118 bits (130), Expect = 3e-21 Identities = 473/737 (64%), Gaps = 21/737 (3%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 ||||| | || || ||||| ||||| || || |||||||| | ||| | | |||| | Sbjct 196517 CCGCTGTTGGTATTGATTTGGGTACCACCTACTCTTGTGTGGGTGTCTTCCGTGATGACC 196458 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | || || || || || || || || ||| | || || || || | || || || | Sbjct 196457 GCATTGAGATCATCGCCAACGACCAGGGAAACCGGACCACCCCTTCCTTTGTCGCTTTCA 196398 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| |||||||| |||| || ||| | || || || || | || || || | | Sbjct 196397 CCGACACTGAGCGCCTGATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCACA 196338 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTT-----TCTGACAAATCTA 349430 | || || || ||||| ||||| | ||||| | ||||| ||||| || Sbjct 196337 ACACCGTCTTCGATGCGAAGCGGTTGATTGGCCGCAAGTTCCAGGACTCTGAGG--TC-- 196282 Query 349431 CACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAA 349490 || | || | || || || || || | | | || | ||| || | || || | Sbjct 196281 --CAGGCCGACATGAAGCACTTCCCCTTCAA-GATCATCGAGAAG--GGCGGCAAGCCCA 196227 Query 349491 TTATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCAT 349547 || |||||||| | || || || || || || || |||| || || ||||| | Sbjct 196226 ACATCGAGGTTGAGTTCAAGGGCGAGACCAAGACC---TTCACCCCAGAGGAGATTTCCT 196170 Query 349548 CAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTG 349607 | ||||| | || ||| || | ||||| | || | |||| || || | Sbjct 196169 CCATGGTCCTCACCAAGATGCGTGAGACCGCTGAGTCCTACCTGGGTGGCACCGTCAACA 196110 Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 | ||||| || || || || ||||| || || || | |||||| ||||| || || | Sbjct 196109 ACGCTGTCATCACGGTCCCCGCCTACTTCAACGACTCTCAGCGTCAAGCAACCAAGGACG 196050 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| ||||| || | || ||| | | || || || || || ||||| || || | Sbjct 196049 CTGGTCTTATTGCTGGCCTGAACGTTTTGCGTATCATCAACGAGCCTACTGCCGCGGCCA 195990 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAG 349787 |||| ||||| || || || | | || || || | || || || || | | Sbjct 195989 TTGCCTATGGTCTCGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGACCTGG 195930 Query 349788 GTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAG 349847 ||||||||||||| ||||| || || || || | || ||||| || || || || || Sbjct 195929 GTGGTGGTACTTTCGATGTCTCGCTCCTGACCATCGAGGAGGGTATCTTCGAGGTCAAGT 195870 Query 349848 CAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATT 349907 | || || ||||| || || || ||||| || || || || || || || || || | Sbjct 195869 CCACCGCCGGTGACACTCACCTGGGTGGCGAGGACTTCGACAACCGCCTGGTCAACCACT 195810 Query 349908 TTGTTAAAGAATTTAAG 349924 |||| || || || ||| Sbjct 195809 TTGTCAACGAGTTCAAG 195793 >seq978 Length=188393 Score = 104 bits (114), Expect = 7e-17 Identities = 183/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 378168 GTTTCTTACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCG 378227 ||||| ||||| |||||| | || | | || |||| || || | ||||| || Sbjct 143650 GTTTCGAACAGTGCCATCATACTTCGCCGTGACGTCCTCTAGCGCCTTGACTAGTCGGCG 143591 Query 378228 AGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACC 378287 ||||||||||||| | || || || || ||||| || ||||| |||||||| | Sbjct 143590 CTGGATATAACCAGTTTCAGCGGTCTTGACAGCGGTATCGATCAAACCCTCACGACCAGC 143531 Query 378288 CATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAA 378347 ||| || |||||||| || ||||| || || || |||| | | ||| |||| | || Sbjct 143530 CATGGCGTGGAAGAAGAACTCAGTGGGTGTCAGACCACGCAGGTAAGAATTCTCGACGAA 143471 Query 378348 TCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAA 378407 || | || | ||||| | |||| ||| ||| | ||||| | ||| || | || || Sbjct 143470 GCCACGGGCCTCGGGCGAGTAGTCATCTTTCGTAAAGTGAGGCAGTGTGCGGTACTTGAA 143411 Query 378408 CCCATATGGAATTCGTTTTCCATCAAC 378434 || ||||||| | ||||| ||||| Sbjct 143410 TCCGAATGGAATCCTCTTTCCCTCAAC 143384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515235277015955