Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq334 284 1e-71
seq223 167 3e-36
seq279 114 1e-20
>seq334
Length=742376
Score = 284 bits (314), Expect = 1e-71
Identities = 515/748 (69%), Gaps = 4/748 (1%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| ||||| | |||||| || ||||| | | ||| |||||| |||
Sbjct 396035 TCATGCGTGTCGCTGTCGGTATCTGGGGAGACGATGTCGAAAGGGTCATTGAGACATACA 395976
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | |||| ||| || || ||| | || || ||||||| ||||| ||
Sbjct 395975 ACCTGATGTCAAACAAGTTCTTCACACATGCCTCCCCCACATTGTTCAATGCTGGCACTC 395916
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| || ||| |||| |||||||| || | |||||||| ||| || || ||||
Sbjct 395915 CCCAGCCCCAGCTGTCATCATGCTTCCTCGTCGACATGAAGGAGGACAGCATTGAGGGCA 395856
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
| || || || || ||| ||||| ||||||||| | ||||||| || ||| |
Sbjct 395855 TTTATGACACCCTAAAGACTTGTGCTATGATCTCCAAGATGGCGGGTGGAATTGGTCTGA 395796
Query 53433 AC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491
|| ||| | | ||||||| | |||| || ||| || || ||||| | | ||
Sbjct 395795 ACGTGCACCG-CATCCGTGCCACCGGCTCATACATCGCTGGCACCAACGGTACCTCTAAT 395737
Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551
|| ||| || ||||| || |||||||||||||| ||||| |||||| ||||||||||
Sbjct 395736 GGCATCACCCCAATGCTGCGGGTCTTCAACAACACCGCCCGATACGTCGACCAGGGTGGC 395677
Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611
||||| || | ||||| |||||||| ||||| ||||||||||| | | |||
Sbjct 395676 AACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCATGGCACGCCGATGTCTTCGAG 395617
Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671
||||| || ||||| |||||| ||| | || ||||| || |||||| || ||
Sbjct 395616 TTTCTTGACCTGCGCAAGAATCACGGTAAGGAGGAGATCCGAGCCCGTGATCTTTTCCTT 395557
Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731
|| || |||||||| || || |||||| | ||| |||||| ||| || ||| ||||
Sbjct 395556 GCCCTCTGGATTCCCGATCTTTTCATGAAGCGGGTCGAGAAGAACGGTGACTGGACCCTG 395497
Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790
|||||||| |||||||| || |||||| | | || |||||||||||||||| | | |
Sbjct 395496 ATGTGCCCTAACGAGTGTCCTGGCCTCGCCGACTG-CTACGGTGAGGAGTTTGAGGCTCT 395438
Query 53791 GTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATG 53850
|| | ||||| |||| || |||| | ||||| | || ||||
Sbjct 395437 CTACGAGCAGTACGAGAAGGAGGGTCGTGGTCGCAAGACCATGAAGGCCCAGAAGCTATG 395378
Query 53851 GGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTC 53910
| |||| || ||| || |||| ||||| || | || | |||| ||||||||
Sbjct 395377 GTATGCCATTCTCGAGGCCCAGACTGAGACTGGCAACCCCTTCATGCTGTACAAGGACCA 395318
Query 53911 GGTCAACGAGAAGAGCAACCAGAAGAAC 53938
| |||| |||||||||||||||||||
Sbjct 395317 CGCCAACCGGAAGAGCAACCAGAAGAAC 395290
>seq223
Length=790387
Score = 167 bits (184), Expect = 3e-36
Identities = 214/295 (73%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081
||| ||||| |||||||| || | |||||||| ||| | ||||| || || || | ||
Sbjct 20183 CAAGCGCGTAAAGATGTAACGAGCGCTGGCCGAATCGCTACCACCGGCAAGACGAGAACC 20124
Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141
||| | ||| ||||| |||| ||| | ||||||| || || || ||||| |||||
Sbjct 20123 AAAGTTACCACTTGGCTCCAGGATGTTTATATTGTTGGATCCAACAAAGTTCTGGGCCAA 20064
Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201
|| ||||| ||||| | ||||||||||||||| || ||||| || | ||
Sbjct 20063 GCCAACGATCGTCTGCTGCAAGGAAGTTTCACCGTGGTGATAGGCAGTCTGTTCGGAGAC 20004
Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261
|||||| ||||| | | |||||| ||||| |||||| ||| ||||| ||||||||
Sbjct 20003 GTATCCAGCCAATTCAACGACCTTCTTGTCCTTCGTCAAGTTGCGCTTGAAGCAGGCGTA 19944
Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316
||| ||||| ||||| || || || |||||||| ||| ||||| || |||
Sbjct 19943 AATGACCTTACGCTGACCAGGCTTTAACCCGTCCACAACGGACGGAATGGACCGC 19889
>seq279
Length=349471
Score = 114 bits (126), Expect = 1e-20
Identities = 302/456 (66%), Gaps = 24/456 (5%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| |||||||| ||||| ||||| ||||||||||| || | | ||||||||||||||
Sbjct 262623 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAGATGTTCTCCATG 262682
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAG 74578
||||||| |||||| | ||||| |||||| |||| | | ||| |||
Sbjct 262683 AAGTCGAAGGGGTTCGACGACTTGTAAA---CCTTCTCGTTGCCCAGAGCG-ACCAGGAG 262738
Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638
|| || || ||||| | ||||||||| |||| | | |||||||| |||
Sbjct 262739 ACGGTCGGCAACAAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGGGC 262798
Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698
||| ||||| |||||||| | ||||| |||| | || |||| || || |
Sbjct 262799 GCATGGCAGAGCCTCGGTCAAGAACTCCTTCTCAATGGCGACAGCCTCGGTGATGATGTC 262858
Query 74699 GTGAA-----TG--TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACG 74750
|| | || | ||||| || | ||||||||||||| | | | | || |
Sbjct 262859 CTGGACACGCTGCTTGCTTGGACGG-------TTCCTCAGGTGAGAGAACAGGAGACA-G 262910
Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810
|| || || ||| || ||||| | || | || || || || | ||||||
Sbjct 262911 GCGAAGTCGGTGTGCAGACCCTCATCACGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCA 262970
Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870
||||| || ||||||||||| | ||| || || | ||| | |||||||||||||||
Sbjct 262971 GGCATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAATGCGCCACTGAAGAAGATG 263030
Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCG 74906
|| ||||| || ||||| || || || || |||
Sbjct 263031 CCCTCGACGGCAGCGAAGGCAACCAGTCGCTGGGCG 263066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547209262403000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |