Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq334 284 1e-71 seq223 167 3e-36 seq279 114 1e-20 >seq334 Length=742376 Score = 284 bits (314), Expect = 1e-71 Identities = 515/748 (69%), Gaps = 4/748 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | |||||| || ||||| | | ||| |||||| ||| Sbjct 396035 TCATGCGTGTCGCTGTCGGTATCTGGGGAGACGATGTCGAAAGGGTCATTGAGACATACA 395976 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||| ||| || || ||| | || || ||||||| ||||| || Sbjct 395975 ACCTGATGTCAAACAAGTTCTTCACACATGCCTCCCCCACATTGTTCAATGCTGGCACTC 395916 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || || ||| |||| |||||||| || | |||||||| ||| || || |||| Sbjct 395915 CCCAGCCCCAGCTGTCATCATGCTTCCTCGTCGACATGAAGGAGGACAGCATTGAGGGCA 395856 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | || || || || ||| ||||| ||||||||| | ||||||| || ||| | Sbjct 395855 TTTATGACACCCTAAAGACTTGTGCTATGATCTCCAAGATGGCGGGTGGAATTGGTCTGA 395796 Query 53433 AC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || ||| | | ||||||| | |||| || ||| || || ||||| | | || Sbjct 395795 ACGTGCACCG-CATCCGTGCCACCGGCTCATACATCGCTGGCACCAACGGTACCTCTAAT 395737 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || ||| || ||||| || |||||||||||||| ||||| |||||| |||||||||| Sbjct 395736 GGCATCACCCCAATGCTGCGGGTCTTCAACAACACCGCCCGATACGTCGACCAGGGTGGC 395677 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | ||||| |||||||| ||||| ||||||||||| | | ||| Sbjct 395676 AACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCATGGCACGCCGATGTCTTCGAG 395617 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 ||||| || ||||| |||||| ||| | || ||||| || |||||| || || Sbjct 395616 TTTCTTGACCTGCGCAAGAATCACGGTAAGGAGGAGATCCGAGCCCGTGATCTTTTCCTT 395557 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || |||||||| || || |||||| | ||| |||||| ||| || ||| |||| Sbjct 395556 GCCCTCTGGATTCCCGATCTTTTCATGAAGCGGGTCGAGAAGAACGGTGACTGGACCCTG 395497 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| |||||||| || |||||| | | || |||||||||||||||| | | | Sbjct 395496 ATGTGCCCTAACGAGTGTCCTGGCCTCGCCGACTG-CTACGGTGAGGAGTTTGAGGCTCT 395438 Query 53791 GTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATG 53850 || | ||||| |||| || |||| | ||||| | || |||| Sbjct 395437 CTACGAGCAGTACGAGAAGGAGGGTCGTGGTCGCAAGACCATGAAGGCCCAGAAGCTATG 395378 Query 53851 GGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTC 53910 | |||| || ||| || |||| ||||| || | || | |||| |||||||| Sbjct 395377 GTATGCCATTCTCGAGGCCCAGACTGAGACTGGCAACCCCTTCATGCTGTACAAGGACCA 395318 Query 53911 GGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | |||| ||||||||||||||||||| Sbjct 395317 CGCCAACCGGAAGAGCAACCAGAAGAAC 395290 >seq223 Length=790387 Score = 167 bits (184), Expect = 3e-36 Identities = 214/295 (73%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| ||||| |||||||| || | |||||||| ||| | ||||| || || || | || Sbjct 20183 CAAGCGCGTAAAGATGTAACGAGCGCTGGCCGAATCGCTACCACCGGCAAGACGAGAACC 20124 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 ||| | ||| ||||| |||| ||| | ||||||| || || || ||||| ||||| Sbjct 20123 AAAGTTACCACTTGGCTCCAGGATGTTTATATTGTTGGATCCAACAAAGTTCTGGGCCAA 20064 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 || ||||| ||||| | ||||||||||||||| || ||||| || | || Sbjct 20063 GCCAACGATCGTCTGCTGCAAGGAAGTTTCACCGTGGTGATAGGCAGTCTGTTCGGAGAC 20004 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 |||||| ||||| | | |||||| ||||| |||||| ||| ||||| |||||||| Sbjct 20003 GTATCCAGCCAATTCAACGACCTTCTTGTCCTTCGTCAAGTTGCGCTTGAAGCAGGCGTA 19944 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316 ||| ||||| ||||| || || || |||||||| ||| ||||| || ||| Sbjct 19943 AATGACCTTACGCTGACCAGGCTTTAACCCGTCCACAACGGACGGAATGGACCGC 19889 >seq279 Length=349471 Score = 114 bits (126), Expect = 1e-20 Identities = 302/456 (66%), Gaps = 24/456 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| ||||| ||||||||||| || | | |||||||||||||| Sbjct 262623 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAGATGTTCTCCATG 262682 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAG 74578 ||||||| |||||| | ||||| |||||| |||| | | ||| ||| Sbjct 262683 AAGTCGAAGGGGTTCGACGACTTGTAAA---CCTTCTCGTTGCCCAGAGCG-ACCAGGAG 262738 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 || || || ||||| | ||||||||| |||| | | |||||||| ||| Sbjct 262739 ACGGTCGGCAACAAACTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGGAGGGC 262798 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTT 74698 ||| ||||| |||||||| | ||||| |||| | || |||| || || | Sbjct 262799 GCATGGCAGAGCCTCGGTCAAGAACTCCTTCTCAATGGCGACAGCCTCGGTGATGATGTC 262858 Query 74699 GTGAA-----TG--TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACG 74750 || | || | ||||| || | ||||||||||||| | | | | || | Sbjct 262859 CTGGACACGCTGCTTGCTTGGACGG-------TTCCTCAGGTGAGAGAACAGGAGACA-G 262910 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 || || || ||| || ||||| | || | || || || || | |||||| Sbjct 262911 GCGAAGTCGGTGTGCAGACCCTCATCACGAGAAATGAGCTCGTTGGAGAAGGTCAGGCCA 262970 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || ||||||||||| | ||| || || | ||| | ||||||||||||||| Sbjct 262971 GGCATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAATGCGCCACTGAAGAAGATG 263030 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCG 74906 || ||||| || ||||| || || || || ||| Sbjct 263031 CCCTCGACGGCAGCGAAGGCAACCAGTCGCTGGGCG 263066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209262403000