Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq334 324 2e-83
seq512 179 4e-40
seq1 176 5e-39
seq223 134 2e-26
seq24 131 2e-25
seq279 93.3 5e-14
>seq334
Length=742376
Score = 324 bits (358), Expect = 2e-83
Identities = 822/1235 (67%), Gaps = 29/1235 (2%)
Strand=Plus/Plus
Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600
|||||||||| ||||| |||||| | ||| | || ||| || | |||| ||| ||
Sbjct 394831 CCACATGTCGAACTGCAGGATGCCTTGCGAGACGGGGCTGCCCTCGTATGTCTTGTAGGG 394890
Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660
||||||| |||||| | |||| || | | ||||| ||||| || ||| ||| ||
Sbjct 394891 GCCCTCCACCTTGGCAATGTCACTTGATGCAGTGAGGGCAGCGTGGTAGATGGTCTCGAA 394950
Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720
|| |||||||| | || |||| |||| |||||| | | || || || |||
Sbjct 394951 GATCTGCTTGTTCAGCTCACGGGCCTCTGGGGAGTCGAAAGGTATGCGCAGTGCCAAGAA 395010
Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCT 80779
|||| || || |||||||| |||| | || || ||||| ||| |||| | | | |
Sbjct 395011 TGCGTCGGCAAGACCCTGAACACCGACACCAATAGGTCGGTGCCGCATGTTGCTGTTG-T 395069
Query 80780 CGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAA 80839
||||||| | ||||| ||| ||| |||| ||||| |||||| || |
Sbjct 395070 AGGCCTCCTTGACCGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGGACGACGA 395129
Query 80840 CCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCT--TCA-CAAATG 80893
|| | ||||| || || | | ||| |||| | | | ||| | | ||| || |||
Sbjct 395130 CCTGGGTAACCTCGTGCAACTGCTGGAAGTTGTAGCAGTTGTTGTCGTAGTCAACATATG 395189
Query 80894 CCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGA 80953
| || || | ||| |||| |||||||| || ||||| || | | | |||| |
Sbjct 395190 CGGGCAGAGCAATGGAGGCCAAGTTGCACACCGCGACCTCATCTGGGGCAGAGTACTCAA 395249
Query 80954 CGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTT 81011
||| || ||||| | ||| || ||| || ||||||||||| |||||||| |||
Sbjct 395250 TGATCTCAGTGCAAAGATTGGAG--CTTCGGATGGTACCCAGGTTCTTCTGGTTGCTCTT 395307
Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071
|||| ||||||||| |||| | ||| | || ||||| ||| | || |||
Sbjct 395308 CCGGTTGGCGTGGTCCTTGTACAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCGAG 395367
Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131
||||| | ||| | || | ||||| | |||||| || || | | ||
Sbjct 395368 AATGGCATACCATAGCTTCTGGGCCTTCATGGTCTTGCGACCACGACCCTCCTTCTCGTA 395427
Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGT 81190
|| |||| | || |||| |||||| | ||| | | |||| | || |||||||
Sbjct 395428 CTGCTCGTAGAGAGCCTCAAACTCCTCACCGTAGCAGT-CGGCGAGGCCAGGACACTCGT 395486
Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGA 81250
|||||||||||||| |||||| || ||||| || |||||||||| || || |
Sbjct 395487 TAGGGCACATCAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAAAAGATCGGGAA 395546
Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCA 81310
|||||||||| ||| || || ||| || |||||| | ||| || || |||||
Sbjct 395547 TCCAGAGGGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTACCGTGATTCTTGCGCA 395606
Query 81311 ACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCT 81370
|| ||||| || | || || || ||||||||||| || || | |||| | ||
Sbjct 395607 GGTCAAGAAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATAGCGAAGGCACC-- 395664
Query 81371 TGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424
| |||| ||||||||||| |||||| ||||| || ||| || || |||| ||
Sbjct 395665 -GGGACGCTTGTTGCCACCCTGGTCGACGTATCGGGCGGTGTTGTTGAAGACCCGCAGCA 395723
Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484
| ||| |||| |||| || |||||| || || |||| || || |||| || |
Sbjct 395724 TTGGGGTGATGCCATTAGAGGTACCGTTGGTGCCAGCGATGTATGAGCCGGTGGCACGGA 395783
Query 81485 --CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTT 81542
| ||| || | |||| || ||||| | | ||| || ||| |||||| ||
Sbjct 395784 TGCGGTGCACGTTCA--GACCAATTCCACCCGCCATCTTGGAGATCATAGCACAAGTCTT 395841
Query 81543 CATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGA 81602
| ||| |||||||| ||||| ||||| || | |||||||| | | ||| || |||
Sbjct 395842 TAGGGTGTCATAAATGCCCTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCATGATGA 395901
Query 81603 CATCTGAGGGCTTTTT-GAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661
|| ||| ||||| | ||| |||||||||| ||| |||| || || |||| |
Sbjct 395902 CAGCTG-GGGCTGGGGAGTGCCAGCATTGAACAATGTGGGGGAGGCATGTGTGAAGAACT 395960
Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGA 81721
|||||||||||||| || || || |||| | | | |||||| || |||||||
Sbjct 395961 TGTTTGACATCAGGTTGTATGTCTCAATGACCCTTTCGACATCGTCTCCCCAGATACCGA 396020
Query 81722 TAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756
||| |||||||| | ||||| ||| ||| ||||
Sbjct 396021 CAGCGACACGCATGATCATGTGCTGTGGCCGCTCG 396055
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090
|||| | || || || ||||||||||| |||||||| || |||||||||| | |||
Sbjct 394315 TGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTG 394374
Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150
||| ||| ||| | | || || | | |||| |||||| ||||||||||| ||
Sbjct 394375 CATGCTGGTGATCTTGCCCATTGATGGCTCCCTCATGTGGATGTTTAGAGACTGAGATTG 394434
Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210
| ||||| || ||||| || || ||||| | | ||| | | | || | || |||||
Sbjct 394435 ATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAATGGTCCTCTGAGAGATCTCCCA 394494
Query 80211 TACTGT 80216
|| ||
Sbjct 394495 GACGGT 394500
>seq512
Length=287951
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || |||||||| ||||| || ||||| |||||
Sbjct 18409 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCA 18350
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || |||||||||||||| || || || ||||||
Sbjct 18349 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 18290
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || |||||||| ||||| |||||||||| || ||||| | ||||| ||
Sbjct 18289 CAGCGTCTGATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGAACCCTCTCCGACTACAAC 18230
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| |||||||| |||||||| || || | || || || |||||
Sbjct 18229 ATCCAGAAGGAATCTACTCTTCACCTGGTTCTCCGCCTCCGTGGTGG 18183
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| | || |||||||| || || |||||||| ||||||
Sbjct 18181 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATCACGCTTGAGGTCGAGTCATCG 18122
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| |||| ||||||||||||||||||||||| |||||||||
Sbjct 18121 GACACGATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCAGACCAG 18062
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| ||||| ||||| ||||| | || |||| || || ||| | ||||| ||
Sbjct 18061 CAACGTCTCATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACGCTATCTGACTACAAC 18002
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| |||||||| || || || || || | ||||| || |||||
Sbjct 18001 ATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGTCTCCGTGGTGG 17955
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || |||||||| || || |||||||| |||||
Sbjct 18637 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCCTCC 18578
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | ||| | || || |||||||||||||| || || || ||||||
Sbjct 18577 GATACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 18518
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || ||||| || ||||| |||||||| | || ||||| | ||||| ||
Sbjct 18517 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 18458
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| || || || ||||| ||| | |||||||| || ||
Sbjct 18457 ATTCAAAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTTCGTGGCGG 18411
>seq1
Length=1124325
Score = 176 bits (194), Expect = 5e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| || ||||| || || ||||||||||| || |||||||| |||||
Sbjct 67465 ATCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCT 67524
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || ||||||||||| || ||||| ||||||
Sbjct 67525 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 67584
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||||||||| || || || || ||||| |||||||| | || ||||| | |||||
Sbjct 67585 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 67644
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| ||||| || || || ||| |||| || ||||||||
Sbjct 67645 AACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGCGGTGG 67694
>seq223
Length=790387
Score = 134 bits (148), Expect = 2e-26
Identities = 235/342 (69%), Gaps = 0/342 (0%)
Strand=Plus/Plus
Query 31911 CACCGAATTTGTCCACCGTGACCTAGCAAACTTTAGCGCTGAAGATATCAAGCGGTCCAT 31970
|||||| |||||| || | || || ||| ||| | |||| | |||||||||
Sbjct 19838 CACCGATTTTGTCAACAGGGAACTTATTCTCTTCAGCATGGCTGATAACCTGCGGTCCAT 19897
Query 31971 TCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAA 32030
||| ||| | |||||| | |||||| ||||| ||||| || ||||||||| ||||
Sbjct 19898 TCCGTCCGTTGTGGACGGGTTAAAGCCTGGTCAGCGTAAGGTCATTTACGCCTGCTTCAA 19957
Query 32031 GAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAAC 32090
| ||| || ||| |||| |||||| | | || | || ||||| | || || ||
Sbjct 19958 GCGCAACTTGACGAAGGACAAGAAGGTCGTTGAATTGGCTGGATACGTCTCCGAACAGAC 20017
Query 32091 GGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTT 32150
|||||||||||||| || | || | ||| || || || | | || ||||||||
Sbjct 20018 TGCCTATCACCACGGTGAAACTTCCTTGCAGCAGACGATCGTTGGCTTGGCCCAGAACTT 20077
Query 32151 TGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGC 32210
||| || | || || | ||| | || |||||| ||| | ||||| | || || ||
Sbjct 20078 TGTTGGATCCAACAATATAAACATCCTGGAGCCAAGTGGTAACTTTGGTTCTCGTCTTGC 20137
Query 32211 CGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCG 32252
|||||| | ||| | || ||| | ||||||||||| || ||
Sbjct 20138 CGGTGGTAGCGATTCGGCCAGCGCTCGTTACATCTTTACGCG 20179
>seq24
Length=629884
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| || ||||| || || ||||||||||| || |||||||| ||||| ||| | |||
Sbjct 219239 CTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCTGACACCAT 219298
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| || | ||| | || || |||||||||||||| ||||| |||||||||||||| |
Sbjct 219299 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGATT 219358
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || || || ||||| || ||||||| || ||||| | ||||| || |||| ||
Sbjct 219359 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 219418
Query 27594 GG 27595
||
Sbjct 219419 GG 219420
>seq279
Length=349471
Score = 93.3 bits (102), Expect = 5e-14
Identities = 276/423 (65%), Gaps = 12/423 (3%)
Strand=Plus/Minus
Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797
|| || || || ||||| ||| ||||| |||||||||||||| || ||||| |||
Sbjct 263038 GTCGAGGGCATCTTCTTCAGTGGCGCATTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGC 262979
Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857
|| ||||| || ||| | || || |||||||| || ||||| || ||||| || |||
Sbjct 262978 CTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTCGTGATGAGGGTCTGCACACC 262919
Query 64858 GAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACCATCACATGGGACTATAATT 64917
|| || || | ||||||| ||||| | | || ||| | | | |
Sbjct 262918 GACTTCGCCTGTCTCCTGTTCTCTCACCTGAGGAACCGTCCAAGCAAGCAGCGTGTCCAG 262859
Query 64918 GATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCCGCGCTTCCGTGT 64977
|| || | | |||||| | ||||| ||||| ||| | || | || || || ||
Sbjct 262858 GACATCATCACCGAGGCTGTCGCCATTGAGAAGGAGTTCTTGACCGAGGCTCTGCCATGC 262799
Query 64978 CGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGA---T 65034
||| |||||||| | || | ||||| ||||| ||||| ||||| || || |
Sbjct 262798 GCCCTCCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTTGCCGACCGT 262739
Query 65035 CGCCTGCTTACTCAGTTTGGTA---TTAAGCCCTACTGGAATTCTTCAAATCCATTTGAC 65091
| |||| | ||| | || | ||| ||| || || || || || || |||
Sbjct 262738 CTCCTGGTCGCTC---TGGGCAACGAGAAGGTTTAC---AAGTCGTCGAACCCCTTCGAC 262685
Query 65092 TGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGGTGAT 65151
| ||||||| ||| || | || ||||| ||||| ||||| ||| | || |||||
Sbjct 262684 TTCATGGAGAACATCTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGAC 262625
Query 65152 TAC 65154
|||
Sbjct 262624 TAC 262622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570303378053200
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