Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq334 324 2e-83 seq512 179 4e-40 seq1 176 5e-39 seq223 134 2e-26 seq24 131 2e-25 seq279 93.3 5e-14 >seq334 Length=742376 Score = 324 bits (358), Expect = 2e-83 Identities = 822/1235 (67%), Gaps = 29/1235 (2%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||||||| ||||| |||||| | ||| | || ||| || | |||| ||| || Sbjct 394831 CCACATGTCGAACTGCAGGATGCCTTGCGAGACGGGGCTGCCCTCGTATGTCTTGTAGGG 394890 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||||||| |||||| | |||| || | | ||||| ||||| || ||| ||| || Sbjct 394891 GCCCTCCACCTTGGCAATGTCACTTGATGCAGTGAGGGCAGCGTGGTAGATGGTCTCGAA 394950 Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720 || |||||||| | || |||| |||| |||||| | | || || || ||| Sbjct 394951 GATCTGCTTGTTCAGCTCACGGGCCTCTGGGGAGTCGAAAGGTATGCGCAGTGCCAAGAA 395010 Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCT 80779 |||| || || |||||||| |||| | || || ||||| ||| |||| | | | | Sbjct 395011 TGCGTCGGCAAGACCCTGAACACCGACACCAATAGGTCGGTGCCGCATGTTGCTGTTG-T 395069 Query 80780 CGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAA 80839 ||||||| | ||||| ||| ||| |||| ||||| |||||| || | Sbjct 395070 AGGCCTCCTTGACCGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGGACGACGA 395129 Query 80840 CCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCT--TCA-CAAATG 80893 || | ||||| || || | | ||| |||| | | | ||| | | ||| || ||| Sbjct 395130 CCTGGGTAACCTCGTGCAACTGCTGGAAGTTGTAGCAGTTGTTGTCGTAGTCAACATATG 395189 Query 80894 CCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGA 80953 | || || | ||| |||| |||||||| || ||||| || | | | |||| | Sbjct 395190 CGGGCAGAGCAATGGAGGCCAAGTTGCACACCGCGACCTCATCTGGGGCAGAGTACTCAA 395249 Query 80954 CGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 ||| || ||||| | ||| || ||| || ||||||||||| |||||||| ||| Sbjct 395250 TGATCTCAGTGCAAAGATTGGAG--CTTCGGATGGTACCCAGGTTCTTCTGGTTGCTCTT 395307 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 |||| ||||||||| |||| | ||| | || ||||| ||| | || ||| Sbjct 395308 CCGGTTGGCGTGGTCCTTGTACAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCGAG 395367 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 ||||| | ||| | || | ||||| | |||||| || || | | || Sbjct 395368 AATGGCATACCATAGCTTCTGGGCCTTCATGGTCTTGCGACCACGACCCTCCTTCTCGTA 395427 Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGT 81190 || |||| | || |||| |||||| | ||| | | |||| | || ||||||| Sbjct 395428 CTGCTCGTAGAGAGCCTCAAACTCCTCACCGTAGCAGT-CGGCGAGGCCAGGACACTCGT 395486 Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGA 81250 |||||||||||||| |||||| || ||||| || |||||||||| || || | Sbjct 395487 TAGGGCACATCAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAAAAGATCGGGAA 395546 Query 81251 TCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCA 81310 |||||||||| ||| || || ||| || |||||| | ||| || || ||||| Sbjct 395547 TCCAGAGGGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTACCGTGATTCTTGCGCA 395606 Query 81311 ACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCT 81370 || ||||| || | || || || ||||||||||| || || | |||| | || Sbjct 395607 GGTCAAGAAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATAGCGAAGGCACC-- 395664 Query 81371 TGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424 | |||| ||||||||||| |||||| ||||| || ||| || || |||| || Sbjct 395665 -GGGACGCTTGTTGCCACCCTGGTCGACGTATCGGGCGGTGTTGTTGAAGACCCGCAGCA 395723 Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484 | ||| |||| |||| || |||||| || || |||| || || |||| || | Sbjct 395724 TTGGGGTGATGCCATTAGAGGTACCGTTGGTGCCAGCGATGTATGAGCCGGTGGCACGGA 395783 Query 81485 --CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTT 81542 | ||| || | |||| || ||||| | | ||| || ||| |||||| || Sbjct 395784 TGCGGTGCACGTTCA--GACCAATTCCACCCGCCATCTTGGAGATCATAGCACAAGTCTT 395841 Query 81543 CATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGA 81602 | ||| |||||||| ||||| ||||| || | |||||||| | | ||| || ||| Sbjct 395842 TAGGGTGTCATAAATGCCCTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCATGATGA 395901 Query 81603 CATCTGAGGGCTTTTT-GAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 || ||| ||||| | ||| |||||||||| ||| |||| || || |||| | Sbjct 395902 CAGCTG-GGGCTGGGGAGTGCCAGCATTGAACAATGTGGGGGAGGCATGTGTGAAGAACT 395960 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGA 81721 |||||||||||||| || || || |||| | | | |||||| || ||||||| Sbjct 395961 TGTTTGACATCAGGTTGTATGTCTCAATGACCCTTTCGACATCGTCTCCCCAGATACCGA 396020 Query 81722 TAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 ||| |||||||| | ||||| ||| ||| |||| Sbjct 396021 CAGCGACACGCATGATCATGTGCTGTGGCCGCTCG 396055 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090 |||| | || || || ||||||||||| |||||||| || |||||||||| | ||| Sbjct 394315 TGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTG 394374 Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150 ||| ||| ||| | | || || | | |||| |||||| ||||||||||| || Sbjct 394375 CATGCTGGTGATCTTGCCCATTGATGGCTCCCTCATGTGGATGTTTAGAGACTGAGATTG 394434 Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210 | ||||| || ||||| || || ||||| | | ||| | | | || | || ||||| Sbjct 394435 ATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAATGGTCCTCTGAGAGATCTCCCA 394494 Query 80211 TACTGT 80216 || || Sbjct 394495 GACGGT 394500 >seq512 Length=287951 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| ||||| || ||||| ||||| Sbjct 18409 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCA 18350 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| || || || |||||| Sbjct 18349 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 18290 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| |||||||||| || ||||| | ||||| || Sbjct 18289 CAGCGTCTGATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGAACCCTCTCCGACTACAAC 18230 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| |||||||| || || | || || || ||||| Sbjct 18229 ATCCAGAAGGAATCTACTCTTCACCTGGTTCTCCGCCTCCGTGGTGG 18183 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | || |||||||| || || |||||||| |||||| Sbjct 18181 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATCACGCTTGAGGTCGAGTCATCG 18122 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| |||| ||||||||||||||||||||||| ||||||||| Sbjct 18121 GACACGATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCAGACCAG 18062 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| ||||| ||||| | || |||| || || ||| | ||||| || Sbjct 18061 CAACGTCTCATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACGCTATCTGACTACAAC 18002 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || || || || | ||||| || ||||| Sbjct 18001 ATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGTCTCCGTGGTGG 17955 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || |||||||| ||||| Sbjct 18637 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCCTCC 18578 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 18577 GATACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 18518 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| |||||||| | || ||||| | ||||| || Sbjct 18517 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 18458 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || || ||||| ||| | |||||||| || || Sbjct 18457 ATTCAAAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTTCGTGGCGG 18411 >seq1 Length=1124325 Score = 176 bits (194), Expect = 5e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || ||||||||||| || |||||||| ||||| Sbjct 67465 ATCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCT 67524 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || ||||||||||| || ||||| |||||| Sbjct 67525 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 67584 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 67585 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 67644 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || ||| |||| || |||||||| Sbjct 67645 AACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGCGGTGG 67694 >seq223 Length=790387 Score = 134 bits (148), Expect = 2e-26 Identities = 235/342 (69%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 31911 CACCGAATTTGTCCACCGTGACCTAGCAAACTTTAGCGCTGAAGATATCAAGCGGTCCAT 31970 |||||| |||||| || | || || ||| ||| | |||| | ||||||||| Sbjct 19838 CACCGATTTTGTCAACAGGGAACTTATTCTCTTCAGCATGGCTGATAACCTGCGGTCCAT 19897 Query 31971 TCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAA 32030 ||| ||| | |||||| | |||||| ||||| ||||| || ||||||||| |||| Sbjct 19898 TCCGTCCGTTGTGGACGGGTTAAAGCCTGGTCAGCGTAAGGTCATTTACGCCTGCTTCAA 19957 Query 32031 GAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAAC 32090 | ||| || ||| |||| |||||| | | || | || ||||| | || || || Sbjct 19958 GCGCAACTTGACGAAGGACAAGAAGGTCGTTGAATTGGCTGGATACGTCTCCGAACAGAC 20017 Query 32091 GGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTT 32150 |||||||||||||| || | || | ||| || || || | | || |||||||| Sbjct 20018 TGCCTATCACCACGGTGAAACTTCCTTGCAGCAGACGATCGTTGGCTTGGCCCAGAACTT 20077 Query 32151 TGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGC 32210 ||| || | || || | ||| | || |||||| ||| | ||||| | || || || Sbjct 20078 TGTTGGATCCAACAATATAAACATCCTGGAGCCAAGTGGTAACTTTGGTTCTCGTCTTGC 20137 Query 32211 CGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCG 32252 |||||| | ||| | || ||| | ||||||||||| || || Sbjct 20138 CGGTGGTAGCGATTCGGCCAGCGCTCGTTACATCTTTACGCG 20179 >seq24 Length=629884 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || ||||||||||| || |||||||| ||||| ||| | ||| Sbjct 219239 CTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCTGACACCAT 219298 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | || | ||| | || || |||||||||||||| ||||| |||||||||||||| | Sbjct 219299 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGATT 219358 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| || ||||||| || ||||| | ||||| || |||| || Sbjct 219359 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 219418 Query 27594 GG 27595 || Sbjct 219419 GG 219420 >seq279 Length=349471 Score = 93.3 bits (102), Expect = 5e-14 Identities = 276/423 (65%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 || || || || ||||| ||| ||||| |||||||||||||| || ||||| ||| Sbjct 263038 GTCGAGGGCATCTTCTTCAGTGGCGCATTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGC 262979 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 || ||||| || ||| | || || |||||||| || ||||| || ||||| || ||| Sbjct 262978 CTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTCGTGATGAGGGTCTGCACACC 262919 Query 64858 GAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACCATCACATGGGACTATAATT 64917 || || || | ||||||| ||||| | | || ||| | | | | Sbjct 262918 GACTTCGCCTGTCTCCTGTTCTCTCACCTGAGGAACCGTCCAAGCAAGCAGCGTGTCCAG 262859 Query 64918 GATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCCGCGCTTCCGTGT 64977 || || | | |||||| | ||||| ||||| ||| | || | || || || || Sbjct 262858 GACATCATCACCGAGGCTGTCGCCATTGAGAAGGAGTTCTTGACCGAGGCTCTGCCATGC 262799 Query 64978 CGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGA---T 65034 ||| |||||||| | || | ||||| ||||| ||||| ||||| || || | Sbjct 262798 GCCCTCCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTTGCCGACCGT 262739 Query 65035 CGCCTGCTTACTCAGTTTGGTA---TTAAGCCCTACTGGAATTCTTCAAATCCATTTGAC 65091 | |||| | ||| | || | ||| ||| || || || || || || ||| Sbjct 262738 CTCCTGGTCGCTC---TGGGCAACGAGAAGGTTTAC---AAGTCGTCGAACCCCTTCGAC 262685 Query 65092 TGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGGTGAT 65151 | ||||||| ||| || | || ||||| ||||| ||||| ||| | || ||||| Sbjct 262684 TTCATGGAGAACATCTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGAC 262625 Query 65152 TAC 65154 ||| Sbjct 262624 TAC 262622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303378053200