Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq556 154 1e-32 >seq556 Length=684303 Score = 154 bits (170), Expect = 1e-32 Identities = 279/403 (69%), Gaps = 14/403 (3%) Strand=Plus/Plus Query 30061 CACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 |||||||||||| | ||||| ||||| || || || ||||| || ||| Sbjct 379777 CACGTAAAACTGCGCAAACATG---TGGCAAGGCGGCAGCGCCATCTTCTTCAGGTCGGC 379833 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTC 30174 |||||||| |||| || ||||||||||| ||| | ||||||| | ||| || || Sbjct 379834 CGGGTTCCACGCGCTCATGATGATGCGCCGGTCGTACGGGTTGTGCTTGAGCTTGTGGAT 379893 Query 30175 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30234 ||| || |||||| || || ||| |||| |||||| || || ||| ||| Sbjct 379894 CACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCTTTCGCGTCGACGTA 379950 Query 30235 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30294 ||| || |||||||||| |||||||||||||||||| || |||||||| ||| | || | Sbjct 379951 CTCGGCCCCGAAATGCCGCCACTGGAACCCGTACACTGGGCCCAGGTCGCCCGCCTCGCG 380010 Query 30295 GTGCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30353 ||| | |||||| | |||| | | || | || |||||| ||||||||||||| | Sbjct 380011 GTG-GCCCAGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTTGA 380069 Query 30354 CCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 30413 | |||| || ||||| || || || || |||||| |||||||| Sbjct 380070 CGCCCTGTTCTGAGAGGGACAGCGACGACGTCTCGCCCGCGATGAACCATAGCAGCTCTG 380129 Query 30414 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | | |||||||||| ||||| | ||| || || ||||| || Sbjct 380130 CGAGGACGGCCTTCTGGAAGACGCGCTTTGTGGTCAGGAGCGG 380172 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29852 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCT 29911 ||||||||||| ||||| | |||||| || |||| ||| |||||||| ||||| Sbjct 379490 GGCTCCCTCTCCAGCTGCACCCTCAGCGCGTCGACGTGGTCCGCATAGACGTGCGCGTCG 379549 Query 29912 CCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29970 |||| | ||| | || || || || | || | ||||| || ||||||| ||| Sbjct 379550 CCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCACACACGTGCGCGATCATGTGCGT 379608 Query 29971 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 30030 || || |||||||||||||| || || || || || || |||||||| | || | ||| Sbjct 379609 CAGCAGCGAGTAGCTGGCGATATTGAAAGGGACGCCCAGGCCCATGTCGCAGGAGCGCTG 379668 Query 30031 GTAGAGCTGACA 30042 ||| ||||| || Sbjct 379669 GTACAGCTGGCA 379680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406305522370620