Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq556 152 5e-32
>seq556
Length=684303
Score = 152 bits (168), Expect = 5e-32
Identities = 266/380 (70%), Gaps = 8/380 (2%)
Strand=Plus/Plus
Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806
||||||| || || ||||||||| || || |||||||||||||| ||| | ||
Sbjct 379797 TGTGGCAAGGCGGCAGCGCCATCTTCTTCAGGTCGGCCGGGTTCCACGCGCTCATGATGA 379856
Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866
| | | ||| | ||||| |||| | ||| |||||| | ||||||||| | |
Sbjct 379857 TGCGCCGGTCGTACGGGTTGTGCTTGAGCTTGTGGATCACCTCGGCCAGCTGGTCGACGC 379916
Query 6867 CCTGTCCCGAATAGTCCGCTT-CGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925
|||| |||| ||||| |||| ||| | || ||||| ||||| || || | |||||||
Sbjct 379917 CCTGGCCCGTGTAGTCGGCTTTCGCGTCGACG-TACTCGGCCCCGAAATGCCGCCACTGG 379975
Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG--GAACCCC-CGCTTGTCC 6982
|||||||| || ||||||| ||||||| ||| || | ||| | |||| ||| ||||
Sbjct 379976 AACCCGTACACTGGGCCCAGGTCGCCCGCCT--CGCGGTGGCCCAGCCCCACGC-TGTCG 380032
Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTG 7042
|| | || |||||||||| ||||||||||||| || ||| | ||||| |
Sbjct 380033 AGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTTGACGCCCTGTTCTGAGAGGGACAGC 380092
Query 7043 GTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACA 7102
| ||| | ||| | |||||| |||||||| ||| ||| ||||| | | ||
Sbjct 380093 GACGACGTCTCGCCCGCGATGAACCATAGCAGCTCTGCGAGGACGGCCTTCTGGAAGACG 380152
Query 7103 CGTTTCGTCGTCAGCAGCGG 7122
|| || || ||||| |||||
Sbjct 380153 CGCTTTGTGGTCAGGAGCGG 380172
Score = 152 bits (168), Expect = 5e-32
Identities = 266/380 (70%), Gaps = 8/380 (2%)
Strand=Plus/Minus
Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282
||||| ||||| || || || || | | ||||| ||| ||| |||||||| ||||||
Sbjct 380172 CCGCTCCTGACCACAAAGCGCGTCTTCCAGAAGGCCGTCCTCGCAGAGCTGCTATGGTTC 380113
Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342
| ||| | ||| | | ||||| | ||| || |||||||||||||
Sbjct 380112 ATCGCGGGCGAGACGTCGTCGCTGTCCCTCTCAGAACAGGGCGTCAAGATCTGGGACGGC 380053
Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTC--CCATCTCGGGAGGAGGGCGAC 34399
|||||||||| || | || |||| ||| |||| | ||| | || ||| |||||||
Sbjct 380052 AACGGGTCTCGCGAGTACCTCGACA-GCGTGGGGCTGGGCCACCGCG--AGGCGGGCGAC 379996
Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG-A 34458
||||||| || ||||||||||||||| | || || ||||| ||||| || | ||| |
Sbjct 379995 CTGGGCCCAGTGTACGGGTTCCAGTGGCGGCATTTCGGGGCCGAGTA-CGTCGACGCGAA 379937
Query 34459 AGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCG 34518
||| ||||| |||| ||||| | ||||||||| | |||||| ||| | ||||
Sbjct 379936 AGCCGACTACACGGGCCAGGGCGTCGACCAGCTGGCCGAGGTGATCCACAAGCTCAAGCA 379877
Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578
||||| | ||| | | ||| | ||| |||||||||||||| || || |||
Sbjct 379876 CAACCCGTACGACCGGCGCATCATCATGAGCGCGTGGAACCCGGCCGACCTGAAGAAGAT 379817
Query 34579 GGCGCTCCCCCCGTGCCACA 34598
|||||| || || |||||||
Sbjct 379816 GGCGCTGCCGCCTTGCCACA 379797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448256880769200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |