Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 170 4e-37 seq512 167 5e-36 seq24 143 6e-29 seq334 87.8 4e-12 >seq1 Length=1124325 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 67679 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 67620 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || ||||| || |||| |||||||||||| Sbjct 67619 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 67560 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 67559 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 67500 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 67499 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 67468 >seq512 Length=287951 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || || || ||||| ||||| ||||| || || | ||||| Sbjct 18416 ACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAGAGGGT 18475 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| || ||||||||||| || |||||||| || | || Sbjct 18476 GCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGGGATGCC 18535 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| |||||||| || ||| || ||||| || Sbjct 18536 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAG 18595 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 18596 GGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 18637 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||||||||| || || || |||||||| || || | ||||| | ||||| Sbjct 18198 AGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGCCCATCC 18257 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| || || || |||||||| || | || ||||||||| Sbjct 18258 TCGAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 18317 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||| || |||||||| || || ||| Sbjct 18318 TGGATCTTGGACTTGACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTC 18377 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 18378 TTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 18409 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || || || || |||||||| || || | || |||| |||||| Sbjct 17970 AGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCAGATAGCGTCCGGCCATCT 18029 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| ||||| || || ||||| ||||| || |||| ||| ||||||||| Sbjct 18030 TCCAACTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGTGGAATTCCCTCCTTGTCC 18089 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || || ||||| || || ||||| || ||||||||| Sbjct 18090 TGAATCTTAGACTTGACGTTGTCAATCGTGTCCGATGACTCGACCTCAAGCGTGATCGTC 18149 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 18150 TTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 18181 >seq24 Length=629884 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 219418 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 219359 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || |||| || ||||||||||||||||| || ||||| ||| Sbjct 219358 AATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 219299 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||||||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 219298 ATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 219240 >seq334 Length=742376 Score = 87.8 bits (96), Expect = 4e-12 Identities = 194/290 (67%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGC---ATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | | |||| || |||||| |||||||| | || Sbjct 395290 GTTCTTCTGGTTGCTCTTCCGG---TTGGCGTGGTCCTTGTACAGCATGAAGGGGTTGCC 395346 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||||| || ||| |||||||| || ||| |||| |||||| | ||||| Sbjct 395347 AGTCTCAGTCTGGGCCTCGAGAATGGCATACCATAGCTTCTGGGCCTTCATGGTCTTGCG 395406 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | || || |||||||||| | |||||| |||| || ||| || ||| || Sbjct 395407 ACCACGACCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCAAACTCCTCACCGTAGCAGTC 395466 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 |||| || ||| ||| || ||||| | || |||| | ||||| | || || || Sbjct 395467 GGCGAGGCCAGGACACTCGTTAGGGCACATCAGGGTCCAGTCACCGTTCTTCTCGACCCG 395526 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCTC 178379 |||||||| || || | |||||| |||| ||||| || | ||||| Sbjct 395527 CTTCATGAAAAGATCGGGAATCCAGAGGGCAAGGAAAAGATCACGGGCTC 395576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159137371139525