Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq556 109 4e-19 >seq556 Length=684303 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683 ||||||||||| ||||| | |||||||| || |||||||| |||||||| || || Sbjct 379490 GGCTCCCTCTCCAGCTGCACCCTCAGCGCGTCGACGTGGTCCGCATAGACGTGCGCGTCG 379549 Query 29684 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29742 |||| | ||| | || || || || | || | ||||| || ||||||| ||| Sbjct 379550 CCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCACACACGTGCGCGATCATGTGCGT 379608 Query 29743 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTG 29802 || || |||||||||||||| || || || || || || |||||||| | || | ||| Sbjct 379609 CAGCAGCGAGTAGCTGGCGATATTGAAAGGGACGCCCAGGCCCATGTCGCAGGAGCGCTG 379668 Query 29803 GTAGAGCTGGCA 29814 ||| |||||||| Sbjct 379669 GTACAGCTGGCA 379680 Score = 104 bits (114), Expect = 2e-17 Identities = 263/403 (65%), Gaps = 14/403 (3%) Strand=Plus/Plus Query 29833 CACGTAAAACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTT 29889 |||||||||||| | ||||| ||||| || || || ||||| || ||| Sbjct 379777 CACGTAAAACTGCGCAAACATG---TGGCAAGGCGGCAGCGCCATCTTCTTCAGGTCGGC 379833 Query 29890 GGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTC 29946 |||||||| || | || ||||||||||| ||| | ||||||| | ||| || || Sbjct 379834 CGGGTTCCACGCGCTCATGATGATGCGCCGGTCGTACGGGTTGTGCTTGAGCTTGTGGAT 379893 Query 29947 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNN 30006 ||| || |||||| || || ||| |||| |||||| | Sbjct 379894 CACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCTTTCGCGTCGACGTA 379950 Query 30007 NNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30066 ||||||||| |||||||||||||||||| || |||||||| ||| | || | Sbjct 379951 CTCGGCCCCGAAATGCCGCCACTGGAACCCGTACACTGGGCCCAGGTCGCCCGCCTCGCG 380010 Query 30067 GTGCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30125 ||| | |||||| | |||| | | || | || |||||| ||||||||||||| | Sbjct 380011 GTG-GCCCAGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTTGA 380069 Query 30126 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 30185 | |||| || ||||| || || || || |||||| |||||||| Sbjct 380070 CGCCCTGTTCTGAGAGGGACAGCGACGACGTCTCGCCCGCGATGAACCATAGCAGCTCTG 380129 Query 30186 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 | | |||||||||| ||||| | ||| || || ||||| || Sbjct 380130 CGAGGACGGCCTTCTGGAAGACGCGCTTTGTGGTCAGGAGCGG 380172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406158324137710