Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq556 109 4e-19
>seq556
Length=684303
Score = 109 bits (120), Expect = 4e-19
Identities = 141/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683
||||||||||| ||||| | |||||||| || |||||||| |||||||| || ||
Sbjct 379490 GGCTCCCTCTCCAGCTGCACCCTCAGCGCGTCGACGTGGTCCGCATAGACGTGCGCGTCG 379549
Query 29684 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29742
|||| | ||| | || || || || | || | ||||| || ||||||| |||
Sbjct 379550 CCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCACACACGTGCGCGATCATGTGCGT 379608
Query 29743 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTG 29802
|| || |||||||||||||| || || || || || || |||||||| | || | |||
Sbjct 379609 CAGCAGCGAGTAGCTGGCGATATTGAAAGGGACGCCCAGGCCCATGTCGCAGGAGCGCTG 379668
Query 29803 GTAGAGCTGGCA 29814
||| ||||||||
Sbjct 379669 GTACAGCTGGCA 379680
Score = 104 bits (114), Expect = 2e-17
Identities = 263/403 (65%), Gaps = 14/403 (3%)
Strand=Plus/Plus
Query 29833 CACGTAAAACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTT 29889
|||||||||||| | ||||| ||||| || || || ||||| || |||
Sbjct 379777 CACGTAAAACTGCGCAAACATG---TGGCAAGGCGGCAGCGCCATCTTCTTCAGGTCGGC 379833
Query 29890 GGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTC 29946
|||||||| || | || ||||||||||| ||| | ||||||| | ||| || ||
Sbjct 379834 CGGGTTCCACGCGCTCATGATGATGCGCCGGTCGTACGGGTTGTGCTTGAGCTTGTGGAT 379893
Query 29947 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNN 30006
||| || |||||| || || ||| |||| |||||| |
Sbjct 379894 CACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCTTTCGCGTCGACGTA 379950
Query 30007 NNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30066
||||||||| |||||||||||||||||| || |||||||| ||| | || |
Sbjct 379951 CTCGGCCCCGAAATGCCGCCACTGGAACCCGTACACTGGGCCCAGGTCGCCCGCCTCGCG 380010
Query 30067 GTGCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30125
||| | |||||| | |||| | | || | || |||||| ||||||||||||| |
Sbjct 380011 GTG-GCCCAGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTTGA 380069
Query 30126 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 30185
| |||| || ||||| || || || || |||||| ||||||||
Sbjct 380070 CGCCCTGTTCTGAGAGGGACAGCGACGACGTCTCGCCCGCGATGAACCATAGCAGCTCTG 380129
Query 30186 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228
| | |||||||||| ||||| | ||| || || ||||| ||
Sbjct 380130 CGAGGACGGCCTTCTGGAAGACGCGCTTTGTGGTCAGGAGCGG 380172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406158324137710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |