Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq556 138 8e-28 >seq556 Length=684303 Score = 138 bits (152), Expect = 8e-28 Identities = 275/402 (68%), Gaps = 14/402 (3%) Strand=Plus/Plus Query 27328 ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 27384 ||||||||||| | | ||| ||||| || || || ||||| || ||| Sbjct 379778 ACGTAAAACTGCGCAAACATG---TGGCAAGGCGGCAGCGCCATCTTCTTCAGGTCGGCC 379834 Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCC 27441 |||||||| |||| || ||||||||||| ||| | ||||||| | ||| || || | Sbjct 379835 GGGTTCCACGCGCTCATGATGATGCGCCGGTCGTACGGGTTGTGCTTGAGCTTGTGGATC 379894 Query 27442 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTAC 27501 || || |||||| || || ||| |||| |||||| | || ||| |||| Sbjct 379895 ACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCTTTCGCGTCGACGTAC 379951 Query 27502 TCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 27561 || || |||||||||| ||| |||||||||||||| || |||||||| ||| | || | | Sbjct 379952 TCGGCCCCGAAATGCCGCCACTGGAACCCGTACACTGGGCCCAGGTCGCCCGCCTCGCGG 380011 Query 27562 TGCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 27620 || | |||||| | |||| | | || | || |||||| ||||||||||||| || Sbjct 380012 TG-GCCCAGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTTGAC 380070 Query 27621 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 27680 |||| || ||||| || || || || |||||| |||||||| | Sbjct 380071 GCCCTGTTCTGAGAGGGACAGCGACGACGTCTCGCCCGCGATGAACCATAGCAGCTCTGC 380130 Query 27681 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 | |||||||||| ||||| | ||| || || ||||| || Sbjct 380131 GAGGACGGCCTTCTGGAAGACGCGCTTTGTGGTCAGGAGCGG 380172 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||||||||| ||||| | |||||| || ||||| ||| |||||||| ||||| Sbjct 379490 GGCTCCCTCTCCAGCTGCACCCTCAGCGCGTCGACGTGGTCCGCATAGACGTGCGCGTCG 379549 Query 27178 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 27236 |||| | ||| | || || || || | || | ||||| || ||||||| ||| Sbjct 379550 CCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCACACACGTGCGCGATCATGTGCGT 379608 Query 27237 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 27296 || || |||||||||||||| || || || || || || |||||||| | || | ||| Sbjct 379609 CAGCAGCGAGTAGCTGGCGATATTGAAAGGGACGCCCAGGCCCATGTCGCAGGAGCGCTG 379668 Query 27297 GTAGAGCTGACA 27308 ||| ||||| || Sbjct 379669 GTACAGCTGGCA 379680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369502764181535