Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq556 138 8e-28
>seq556
Length=684303
Score = 138 bits (152), Expect = 8e-28
Identities = 275/402 (68%), Gaps = 14/402 (3%)
Strand=Plus/Plus
Query 27328 ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 27384
||||||||||| | | ||| ||||| || || || ||||| || |||
Sbjct 379778 ACGTAAAACTGCGCAAACATG---TGGCAAGGCGGCAGCGCCATCTTCTTCAGGTCGGCC 379834
Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCC 27441
|||||||| |||| || ||||||||||| ||| | ||||||| | ||| || || |
Sbjct 379835 GGGTTCCACGCGCTCATGATGATGCGCCGGTCGTACGGGTTGTGCTTGAGCTTGTGGATC 379894
Query 27442 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTAC 27501
|| || |||||| || || ||| |||| |||||| | || ||| ||||
Sbjct 379895 ACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCTTTCGCGTCGACGTAC 379951
Query 27502 TCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 27561
|| || |||||||||| ||| |||||||||||||| || |||||||| ||| | || | |
Sbjct 379952 TCGGCCCCGAAATGCCGCCACTGGAACCCGTACACTGGGCCCAGGTCGCCCGCCTCGCGG 380011
Query 27562 TGCTCGAAGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 27620
|| | |||||| | |||| | | || | || |||||| ||||||||||||| ||
Sbjct 380012 TG-GCCCAGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTTGAC 380070
Query 27621 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 27680
|||| || ||||| || || || || |||||| |||||||| |
Sbjct 380071 GCCCTGTTCTGAGAGGGACAGCGACGACGTCTCGCCCGCGATGAACCATAGCAGCTCTGC 380130
Query 27681 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722
| |||||||||| ||||| | ||| || || ||||| ||
Sbjct 380131 GAGGACGGCCTTCTGGAAGACGCGCTTTGTGGTCAGGAGCGG 380172
Score = 100 bits (110), Expect = 2e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177
||||||||||| ||||| | |||||| || ||||| ||| |||||||| |||||
Sbjct 379490 GGCTCCCTCTCCAGCTGCACCCTCAGCGCGTCGACGTGGTCCGCATAGACGTGCGCGTCG 379549
Query 27178 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 27236
|||| | ||| | || || || || | || | ||||| || ||||||| |||
Sbjct 379550 CCCATGACGTGCGTCAGGCTG-CCGGGGACGAGGTCACACACGTGCGCGATCATGTGCGT 379608
Query 27237 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 27296
|| || |||||||||||||| || || || || || || |||||||| | || | |||
Sbjct 379609 CAGCAGCGAGTAGCTGGCGATATTGAAAGGGACGCCCAGGCCCATGTCGCAGGAGCGCTG 379668
Query 27297 GTAGAGCTGACA 27308
||| ||||| ||
Sbjct 379669 GTACAGCTGGCA 379680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369502764181535
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |