Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1 176 4e-39
seq512 154 1e-32
seq24 127 2e-24
>seq1
Length=1124325
Score = 176 bits (194), Expect = 4e-39
Identities = 180/233 (77%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || ||||| || || | ||||| ||||| ||| ||||||||| ||||| ||||||
Sbjct 67697 CCACCACCGCGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 67638
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
||||||||||| |||| |||||||||||||||||||| ||||| ||||| ||||| | |
Sbjct 67637 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGG 67578
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810
|||| || ||||||||| ||| || ||| || | || | |||||| ||||
Sbjct 67577 GGAATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACT 67520
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 67519 CCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 67467
>seq512
Length=287951
Score = 154 bits (170), Expect = 1e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || ||||| || || |||||| |||||||| |||||||||
Sbjct 18411 CCGCCACGAAGACGGAGGACGAGATGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGAG 18470
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||||||||| || || |||||||| ||||| | |||
Sbjct 18471 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGGTCAGGGGGG 18530
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | || ||| ||||| ||
Sbjct 18531 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTATCGGAGGACTCGAC 18589
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| | || || || || || || || ||||| ||||| |||||||||
Sbjct 18590 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATG 18638
Score = 132 bits (146), Expect = 4e-26
Identities = 169/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || || ||||| | |||||| |||||||| |||||||| ||||| ||||| |
Sbjct 17953 CGCCACCACGGAGACGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCAG 18012
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
| || || || | || || | ||||||||| ||||| || || || || ||||| | |
Sbjct 18013 ATAGCGTCCGGCCATCTTCCAACTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGTG 18072
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCC 41812
||| | |||||||||| ||| | || | | ||| | || ||||| |||||
Sbjct 18073 GAATTCCCTCCTTGTCC-TGAATCTTAGACTTGACGTTGTCAATCGTGTCCGATGACTCG 18131
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | ||| ||||| || ||||||| ||||| ||||||||||||||
Sbjct 18132 ACCTCAAGCGTGATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 18181
Score = 129 bits (142), Expect = 5e-25
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || || |||||||| ||||| |||||||||
Sbjct 18183 CCACCACGGAGGCGGAGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 18242
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| ||| | || ||||||||||| || || || ||||| ||||| ||||| | |||
Sbjct 18243 AGGGTTCGCCCATCCTCGAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGG 18302
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | ||||| ||||| |
Sbjct 18303 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCTGAGGACTCGA 18360
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || ||||| ||||| ||||| ||||||||
Sbjct 18361 CCTCGAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 18409
>seq24
Length=629884
Score = 127 bits (140), Expect = 2e-24
Identities = 139/182 (76%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||| |||||||| | || || ||||||||||||||||| |
Sbjct 219420 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 219361
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
||| ||||| ||||| | ||||| || |||||||||| ||| || ||| ||| |
Sbjct 219360 TCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTG 219302
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||||||||| | || || || || |||||||| ||||| |||
Sbjct 219301 TCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 219242
Query 41852 AA 41853
||
Sbjct 219241 AA 219240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462298307882000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |