Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq2 102 8e-17
>seq2
Length=5746313
Score = 102 bits (112), Expect = 8e-17
Identities = 196/287 (68%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || || || ||||| ||| ||| | |||||||||||||||||||| |||||
Sbjct 3731079 ATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGTATGTTCTCCATCATGATCTGG 3731020
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| |||||||| || || | || || || || || |||||| || | |
Sbjct 3731019 AAACCGTAGAAGCATCGCGCCTCAGGAATCTGGACCTCGCCGCTGAATCGCTCGACCAAG 3730960
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| ||||| ||||||||||| |||||| || || || | || || ||||| |||
Sbjct 3730959 TTCTCGTTGACGATGCCGTCTGACGCGGCAAAGAAGGCAAGGATGTGGGAGATGAAGTAT 3730900
Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470
|| || || || || | | |||||| | | || ||||| | || | |||
Sbjct 3730899 TTCTCATCCTCGTTGATTCTGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCT 3730840
Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
|||| ||||| ||| ||| | ||||| || ||||| | ||| ||
Sbjct 3730839 TCGGCAGTCCAGAAAGAAGCTTCAGCCTTCTTGTACATCTGCCAGAT 3730793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545399451080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |