Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 102 8e-17 >seq2 Length=5746313 Score = 102 bits (112), Expect = 8e-17 Identities = 196/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || ||||| ||| ||| | |||||||||||||||||||| ||||| Sbjct 3731079 ATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGTATGTTCTCCATCATGATCTGG 3731020 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| |||||||| || || | || || || || || |||||| || | | Sbjct 3731019 AAACCGTAGAAGCATCGCGCCTCAGGAATCTGGACCTCGCCGCTGAATCGCTCGACCAAG 3730960 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||| ||||||||||| |||||| || || || | || || ||||| ||| Sbjct 3730959 TTCTCGTTGACGATGCCGTCTGACGCGGCAAAGAAGGCAAGGATGTGGGAGATGAAGTAT 3730900 Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 || || || || || | | |||||| | | || ||||| | || | ||| Sbjct 3730899 TTCTCATCCTCGTTGATTCTGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCT 3730840 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||| ||||| ||| ||| | ||||| || ||||| | ||| || Sbjct 3730839 TCGGCAGTCCAGAAAGAAGCTTCAGCCTTCTTGTACATCTGCCAGAT 3730793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545399451080