Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2 226 3e-54
>seq2
Length=5746313
Score = 226 bits (250), Expect = 3e-54
Identities = 640/974 (66%), Gaps = 22/974 (2%)
Strand=Plus/Minus
Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769
||| |||| ||| || ||||| ||||||| || ||| |||| || ||||| |||||
Sbjct 596966 AGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCA 596907
Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCAT 53828
|||||| | |||||| || | || | ||| |||||||| ||| || | |
Sbjct 596906 GAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-T 596848
Query 53829 CCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGA 53888
|||| || || ||||| || ||||||| || |||||| || | ||| || | |||||
Sbjct 596847 CCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA 596788
Query 53889 CGACACGAGCCTTTATTATAGATTTGT--ATCTCTTTTCTCTT--TCGTA--TAGTGTAT 53942
| ||||| || | |||| | ||| ||| ||||| | |||
Sbjct 596787 GCTTCTGGGCCTTGATCTT----TTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAG 596732
Query 53943 ACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 54002
| | || ||||| || || |||||| | ||| ||||| || |||| || ||||
Sbjct 596731 AGGGCC--TCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACA 596674
Query 54003 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 54062
| | || ||||||||||| | || || |||||||| |||||||| |||||||| || |
Sbjct 596673 TAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGG 596614
Query 54063 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 54122
| | || ||||| | | | || || || || |||||| ||||| ||||
Sbjct 596613 CAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGA 596554
Query 54123 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGT 54182
|| | | | ||| || ||||| || || | || || | | | ||||| || ||||
Sbjct 596553 ACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGT 596494
Query 54183 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 54242
| || || || || | ||||| ||| ||||| || | || | | ||| |||| |||||
Sbjct 596493 TGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATAC 596434
Query 54243 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 54302
||||||||| ||| ||||| |||| |||||| || | ||||||||| ||
Sbjct 596433 CATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGT 596374
Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362
||||| || || || ||||| || ||||| | ||||| || | || ||||| |
Sbjct 596373 TGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAA 596314
Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422
| || || || || |||||| |||||| | || || || |||| | ||| | |
Sbjct 596313 TACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACA---GCTGA-GCC 596258
Query 54423 T----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 54478
| || || || || || | |||||||| ||||| || || | || || |
Sbjct 596257 TGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATG 596198
Query 54479 AGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 54538
|| ||||| ||||| ||| | || || || | || || || || ||||||
Sbjct 596197 AGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACGC 596138
Query 54539 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTT 54598
|| | ||| ||||| ||||| || || |||||| || | ||||| | || |||
Sbjct 596137 ATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCGC 596078
Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAG 54658
|||||||| || || || || || | ||| ||||| || ||||| | ||| | |||
Sbjct 596077 TCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCGGAG 596018
Query 54659 TTGAGTTTATCCTT 54672
| ||| | |||||
Sbjct 596017 TCGAGGTCCTCCTT 596004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721369932880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |