Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 226 3e-54 >seq2 Length=5746313 Score = 226 bits (250), Expect = 3e-54 Identities = 640/974 (66%), Gaps = 22/974 (2%) Strand=Plus/Minus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 ||| |||| ||| || ||||| ||||||| || ||| |||| || ||||| ||||| Sbjct 596966 AGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCA 596907 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCAT 53828 |||||| | |||||| || | || | ||| |||||||| ||| || | | Sbjct 596906 GAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-T 596848 Query 53829 CCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGA 53888 |||| || || ||||| || ||||||| || |||||| || | ||| || | ||||| Sbjct 596847 CCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA 596788 Query 53889 CGACACGAGCCTTTATTATAGATTTGT--ATCTCTTTTCTCTT--TCGTA--TAGTGTAT 53942 | ||||| || | |||| | ||| ||| ||||| | ||| Sbjct 596787 GCTTCTGGGCCTTGATCTT----TTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAG 596732 Query 53943 ACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 54002 | | || ||||| || || |||||| | ||| ||||| || |||| || |||| Sbjct 596731 AGGGCC--TCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACA 596674 Query 54003 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 54062 | | || ||||||||||| | || || |||||||| |||||||| |||||||| || | Sbjct 596673 TAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGG 596614 Query 54063 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 54122 | | || ||||| | | | || || || || |||||| ||||| |||| Sbjct 596613 CAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGA 596554 Query 54123 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGT 54182 || | | | ||| || ||||| || || | || || | | | ||||| || |||| Sbjct 596553 ACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGT 596494 Query 54183 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 54242 | || || || || | ||||| ||| ||||| || | || | | ||| |||| ||||| Sbjct 596493 TGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATAC 596434 Query 54243 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 54302 ||||||||| ||| ||||| |||| |||||| || | ||||||||| || Sbjct 596433 CATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGT 596374 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 ||||| || || || ||||| || ||||| | ||||| || | || ||||| | Sbjct 596373 TGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAA 596314 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 | || || || || |||||| |||||| | || || || |||| | ||| | | Sbjct 596313 TACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACA---GCTGA-GCC 596258 Query 54423 T----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 54478 | || || || || || | |||||||| ||||| || || | || || | Sbjct 596257 TGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATG 596198 Query 54479 AGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 54538 || ||||| ||||| ||| | || || || | || || || || |||||| Sbjct 596197 AGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACGC 596138 Query 54539 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTT 54598 || | ||| ||||| ||||| || || |||||| || | ||||| | || ||| Sbjct 596137 ATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCGC 596078 Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAG 54658 |||||||| || || || || || | ||| ||||| || ||||| | ||| | ||| Sbjct 596077 TCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCGGAG 596018 Query 54659 TTGAGTTTATCCTT 54672 | ||| | ||||| Sbjct 596017 TCGAGGTCCTCCTT 596004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721369932880