Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2 167 2e-36
seq8 131 2e-25
seq4 123 3e-23
seq3 116 4e-21
>seq2
Length=5746313
Score = 167 bits (184), Expect = 2e-36
Identities = 313/456 (69%), Gaps = 3/456 (1%)
Strand=Plus/Plus
Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCT 117042
||||||||||||||| || |||||| | | || ||| | |||| | | ||| |
Sbjct 3731193 GAAGGCCGAGTGGGCCCTTACTTGGATCACTGACAAGGAGTCAACCTTTGCTCAACGCTT 3731252
Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102
||| |||||||| || |||||||| ||||||| || |||||| |||| || ||
Sbjct 3731253 GGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTG 3731312
Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162
||||||||| || || || ||||| |||||||| ||| ||||||| | ||||| | ||
Sbjct 3731313 GCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGTTGATCTCGCGTGA 3731372
Query 117163 CGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG 117222
|||||| || || |||||||| || |||||||| || || | | || || ||
Sbjct 3731373 CGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTCCCACCTGAAGAATCGCCCCAG 3731432
Query 117223 CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282
| || | ||| | ||||| |||| || || ||||| || ||||| ||| | ||
Sbjct 3731433 CAAGGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATTGAGCAAGAGTTCTTGAC 3731492
Query 117283 CGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341
|| || || || |||| ||||||||| | || | | | ||| ||||||||| |
Sbjct 3731493 AGAGGCCCT-CCCTTGCGCCCTGCTGGGAATGAACTCCAACCTCATGAAGCAATACATTG 3731551
Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCA 117401
|||| || || ||| | || || || | || | | || ||| ||| | | |||
Sbjct 3731552 AGTTTGTTGCGGACCGTCTCCTCCTTGCTCTCGGCAACGAGAAGGTGTACCGCGCCACCA 3731611
Query 117402 ACCCGCTGGACTTTATGAACCTCATCTC-CTTGGAG 117436
|||| | ||||| ||| | |||||| || ||||
Sbjct 3731612 ACCCCTTCGACTTCATGGAGAACATCTCTCTGGGAG 3731647
Score = 156 bits (172), Expect = 4e-33
Identities = 206/285 (72%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| || || || |||||||| | ||| ||| | ||||||
Sbjct 3730793 ATCTGGCAGATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTG 3730852
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
||||||||| | ||||||| | | | ||||| | ||| | ||||||
Sbjct 3730853 TCCAAGGACCTGCACGACTGGAACAACAGAATCAACGAGGATGAGAAATACTTCATCTCC 3730912
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | || ||||| || ||||| |||||||||||||||||||| ||||||||||
Sbjct 3730913 CACATCCTTGCCTTCTTTGCCGCGTCAGACGGCATCGTCAACGAGAACTTGGTCGAGCGA 3730972
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| ||||| ||| | | |||||||| ||||||||||| || |||||| |||
Sbjct 3730973 TTCAGCGGCGAGGTCCAGATTCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGATG 3731032
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| || | || || ||||| ||||| |||
Sbjct 3731033 GAGAACATACACTCCGAGACCTACTCCCTGCTCATTGACACCTAC 3731077
>seq8
Length=2477967
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||||||||| || |||||| | || || || | ||
Sbjct 2273148 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 2273207
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| || |||||||| | |||||
Sbjct 2273208 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 2273267
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| ||||| ||||| || |||| ||||||||| ||||||||||
Sbjct 2273268 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 2273327
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||| ||| || || || || ||||
Sbjct 2273328 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTGCG 2273362
>seq4
Length=3212107
Score = 123 bits (136), Expect = 3e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| |||||||| |||| ||||| || ||
Sbjct 2382906 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 2382965
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || || | ||||| ||||||||||| | |||||
Sbjct 2382966 GACACTATCGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 2383024
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || | |||| || ||||| || || || |||| ||||||||| ||||||||
Sbjct 2383025 ACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGACTACAA 2383084
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| ||| || || || ||
Sbjct 2383085 CATCCAGAAGGAGAGCACCCTCCACCTCGT 2383114
Score = 118 bits (130), Expect = 1e-21
Identities = 151/208 (73%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756
|| |||| || || ||||| ||||| ||||| ||| | || ||||| | |||||| |
Sbjct 2383206 TAGTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCA 2383265
Query 40757 TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGAC 40816
| | | ||||| || |||| ||||| ||||||||||| | ||||| || |||
Sbjct 2383266 TCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCGCCTGACCAACAGCGAT 2383325
Query 40817 TCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGA 40876
| |||| ||| || || |||||||| || | || |||||| |||||||||||| || |
Sbjct 2383326 TGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGTACCCTCTCCGACTACAACATTCAAA 2383385
Query 40877 AGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||| |||| || || || || ||||
Sbjct 2383386 AGGAATCCACTCTCCACCTTGTCCTGCG 2383413
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || | || || || |||||||| | || || || | |
Sbjct 2383427 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGTCATCG 2383486
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| ||||| || |||| ||||| ||||| || || | |||||
Sbjct 2383487 GATACTATTGACAACG-TCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCA 2383545
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| || ||||| ||| |||| || | || || || | ||||||||
Sbjct 2383546 ACAACGATTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGAACTCTGAGTGACTACAA 2383605
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||| ||| | || ||||||| ||
Sbjct 2383606 CATCCAGAAAGAGTCTACCTTGCATCTGGT 2383635
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | ||||| || || |||||| |||| || || | |
Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| ||||| || || | ||||| || || || ||| |||| ||
Sbjct 2383715 GATACTATTGACAACG-TCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGATCA 2383773
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || || |||| || ||||| ||| |||| || | || ||| | | |||||||||
Sbjct 2383774 ACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTACAA 2383833
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| |||||||| | || || || || ||
Sbjct 2383834 CATTCAGAAGGAATCAACACTTCACCTGGT 2383863
>seq3
Length=5106013
Score = 116 bits (128), Expect = 4e-21
Identities = 139/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750
|||| || ||||| || || ||||||||||| ||||||||| |||| || || | |||
Sbjct 1583029 TGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCG 1582970
Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810
||| | | | | | ||| || || | ||||| |||||||| || | ||||| |
Sbjct 1582969 ACACCATCGACAATGTTAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAAC 1582910
Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870
|||| || |||| || ||||| ||||| || || | || ||||| |||||||||||
Sbjct 1582909 AACGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACA 1582850
Query 40871 TCCAGAAGG 40879
|||||||||
Sbjct 1582849 TCCAGAAGG 1582841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219000352560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |