Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 167 2e-36 seq8 131 2e-25 seq4 123 3e-23 seq3 116 4e-21 >seq2 Length=5746313 Score = 167 bits (184), Expect = 2e-36 Identities = 313/456 (69%), Gaps = 3/456 (1%) Strand=Plus/Plus Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCT 117042 ||||||||||||||| || |||||| | | || ||| | |||| | | ||| | Sbjct 3731193 GAAGGCCGAGTGGGCCCTTACTTGGATCACTGACAAGGAGTCAACCTTTGCTCAACGCTT 3731252 Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102 ||| |||||||| || |||||||| ||||||| || |||||| |||| || || Sbjct 3731253 GGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTG 3731312 Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162 ||||||||| || || || ||||| |||||||| ||| ||||||| | ||||| | || Sbjct 3731313 GCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGTTGATCTCGCGTGA 3731372 Query 117163 CGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG 117222 |||||| || || |||||||| || |||||||| || || | | || || || Sbjct 3731373 CGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTCCCACCTGAAGAATCGCCCCAG 3731432 Query 117223 CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282 | || | ||| | ||||| |||| || || ||||| || ||||| ||| | || Sbjct 3731433 CAAGGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATTGAGCAAGAGTTCTTGAC 3731492 Query 117283 CGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341 || || || || |||| ||||||||| | || | | | ||| ||||||||| | Sbjct 3731493 AGAGGCCCT-CCCTTGCGCCCTGCTGGGAATGAACTCCAACCTCATGAAGCAATACATTG 3731551 Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCA 117401 |||| || || ||| | || || || | || | | || ||| ||| | | ||| Sbjct 3731552 AGTTTGTTGCGGACCGTCTCCTCCTTGCTCTCGGCAACGAGAAGGTGTACCGCGCCACCA 3731611 Query 117402 ACCCGCTGGACTTTATGAACCTCATCTC-CTTGGAG 117436 |||| | ||||| ||| | |||||| || |||| Sbjct 3731612 ACCCCTTCGACTTCATGGAGAACATCTCTCTGGGAG 3731647 Score = 156 bits (172), Expect = 4e-33 Identities = 206/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || || || |||||||| | ||| ||| | |||||| Sbjct 3730793 ATCTGGCAGATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTG 3730852 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | | | ||||| | ||| | |||||| Sbjct 3730853 TCCAAGGACCTGCACGACTGGAACAACAGAATCAACGAGGATGAGAAATACTTCATCTCC 3730912 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| || ||||| |||||||||||||||||||| |||||||||| Sbjct 3730913 CACATCCTTGCCTTCTTTGCCGCGTCAGACGGCATCGTCAACGAGAACTTGGTCGAGCGA 3730972 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | | |||||||| ||||||||||| || |||||| ||| Sbjct 3730973 TTCAGCGGCGAGGTCCAGATTCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGATG 3731032 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || ||||| ||||| ||| Sbjct 3731033 GAGAACATACACTCCGAGACCTACTCCCTGCTCATTGACACCTAC 3731077 >seq8 Length=2477967 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | || Sbjct 2273148 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 2273207 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| || |||||||| | ||||| Sbjct 2273208 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 2273267 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 2273268 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 2273327 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| ||| || || || || |||| Sbjct 2273328 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTGCG 2273362 >seq4 Length=3212107 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| |||| ||||| || || Sbjct 2382906 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 2382965 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || || | ||||| ||||||||||| | ||||| Sbjct 2382966 GACACTATCGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 2383024 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| || ||||| || || || |||| ||||||||| |||||||| Sbjct 2383025 ACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGACTACAA 2383084 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| ||| || || || || Sbjct 2383085 CATCCAGAAGGAGAGCACCCTCCACCTCGT 2383114 Score = 118 bits (130), Expect = 1e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| || || ||||| ||||| ||||| ||| | || ||||| | |||||| | Sbjct 2383206 TAGTCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCA 2383265 Query 40757 TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGAC 40816 | | | ||||| || |||| ||||| ||||||||||| | ||||| || ||| Sbjct 2383266 TCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCGCCTGACCAACAGCGAT 2383325 Query 40817 TCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGA 40876 | |||| ||| || || |||||||| || | || |||||| |||||||||||| || | Sbjct 2383326 TGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGTACCCTCTCCGACTACAACATTCAAA 2383385 Query 40877 AGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| |||| || || || || |||| Sbjct 2383386 AGGAATCCACTCTCCACCTTGTCCTGCG 2383413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || |||||||| | || || || | | Sbjct 2383427 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGTCATCG 2383486 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || |||| ||||| ||||| || || | ||||| Sbjct 2383487 GATACTATTGACAACG-TCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCA 2383545 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || ||||| ||| |||| || | || || || | |||||||| Sbjct 2383546 ACAACGATTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGAACTCTGAGTGACTACAA 2383605 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||| | || ||||||| || Sbjct 2383606 CATCCAGAAAGAGTCTACCTTGCATCTGGT 2383635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || || |||||| |||| || || | | Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || || | ||||| || || || ||| |||| || Sbjct 2383715 GATACTATTGACAACG-TCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGATCA 2383773 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| || ||||| ||| |||| || | || ||| | | ||||||||| Sbjct 2383774 ACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTACAA 2383833 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| |||||||| | || || || || || Sbjct 2383834 CATTCAGAAGGAATCAACACTTCACCTGGT 2383863 >seq3 Length=5106013 Score = 116 bits (128), Expect = 4e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || ||||| || || ||||||||||| ||||||||| |||| || || | ||| Sbjct 1583029 TGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCG 1582970 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 ||| | | | | | ||| || || | ||||| |||||||| || | ||||| | Sbjct 1582969 ACACCATCGACAATGTTAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAAC 1582910 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 |||| || |||| || ||||| ||||| || || | || ||||| ||||||||||| Sbjct 1582909 AACGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACA 1582850 Query 40871 TCCAGAAGG 40879 ||||||||| Sbjct 1582849 TCCAGAAGG 1582841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219000352560