Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq8 107 2e-18
seq4 98.7 1e-15
>seq8
Length=2477967
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
||||||||||| || || ||||| || | || || || |||| || |||||||| ||
Sbjct 2273344 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 2273285
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106
||||| || | ||||| ||||||| ||| | || ||||||||| ||| || |||
Sbjct 2273284 GCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTG 2273225
Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166
| | | | |||||| || ||||| || | ||||| || |||||||| || |||
Sbjct 2273224 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 2273165
Query 43167 TTTACAAAGATTTGCAT 43183
|| || ||||| |||||
Sbjct 2273164 TTGACGAAGATCTGCAT 2273148
>seq4
Length=3212107
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
||||||||||| || || ||||| || | || || || |||| || || ||||| ||
Sbjct 2383102 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 2383043
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106
|| || || | ||||| ||||| | ||| | || |||||||||| ||| || ||
Sbjct 2383042 GCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC 2382983
Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165
| ||| | | | |||||| || || || |||| |||||||| ||||| || || ||
Sbjct 2382982 A-CGTTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGT 2382924
Query 43166 CTTTACAAAGATTTGCAT 43183
||| || ||||| |||||
Sbjct 2382923 CTTCACGAAGATCTGCAT 2382906
Score = 93.3 bits (102), Expect = 5e-14
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||||||||| ||||| || | || || || | || || |||||||||||||||||
Sbjct 2383389 TCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAG 2383330
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| | |||||| ||||| | ||| | || |||||||| | ||| | || | |||| |
Sbjct 2383329 ATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGT-CTTGAATCTTCGACTTGACATT 2383271
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| ||| || || || | || ||||| ||||| || || ||||| ||
Sbjct 2383270 GTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 2383211
Score = 82.4 bits (90), Expect = 9e-11
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||| |||||| || ||| || || || ||||| ||| |||||| || | || ||
Sbjct 2383635 ACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCATCCTCC 2383576
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
| |||||| || || || || | ||| || ||||| | || | | |||||||||| ||
Sbjct 2383575 AACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCC-TG 2383517
Query 43095 ATTTTTTGT-TTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
| | || | |||| ||| | || || || || || || || | ||||||||| |
Sbjct 2383516 AATCTTGCTCTTGA-CGTTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCT 2383458
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || | ||||| ||||||||||||||
Sbjct 2383457 TTCCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817378420680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |