Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 165 2e-35 seq2 134 3e-26 seq12 96.9 7e-15 >seq1 Length=5759619 Score = 165 bits (182), Expect = 2e-35 Identities = 273/394 (69%), Gaps = 29/394 (7%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| |||| || ||||| || ||||||||||| || ||||||||||| || ||| Sbjct 2087051 TGCTCTTCTACGGGCCGCCCGGCACGGGCAAGACGTCGACGATCCTGGCGCTCGC--GAA 2086994 Query 254071 CC--CTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGA 254128 |||| || || || |||| | | | ||||| ||||||||||| || ||||| Sbjct 2086993 GGAGCTGTACGGACCGGAGATGATGAAGGCGAGGGTGCTAGAGCTGAACGCGTCGGACGA 2086934 Query 254129 ACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGT------CGAT 254182 || ||| | | |||| || || ||| | ||| ||| | |||| ||| Sbjct 2086933 GCGGGGGATCAGCATCGTGCGGGAGAAGGTGAAGGACTTCGCGCGGATGCAGCTGACGAG 2086874 Query 254183 TTCGTCG------TTCCA-----------ACCCGGCTGTCCGCCTTTCAAGCTCGTGATC 254225 || || | || ||||| || ||||| |||||| || | | Sbjct 2086873 CCCGCCGGCGGGGTACCGGGAGCGGGGGTACCCG--TGCCCGCCGTTCAAGATCATCGTG 2086816 Query 254226 CTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAG 254285 |||||||||||||||| ||||||| ||||||||| ||| || || || ||||||||| Sbjct 2086815 CTGGACGAGGCGGACAGCATGACGCAGGACGCGCAGAGCGCGCTGCGGCGGACGATGGAG 2086756 Query 254286 ACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCC 254345 ||| || | | ||||| || ||||||||||||||||||||| || |||||||| | Sbjct 2086755 ACGTACAGCAAGATCACGCGGTTCTGCCTGGTGTGCAACTACGTGACGCGGATCATCGAC 2086696 Query 254346 CCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||||| |||||| |||||| || |||| Sbjct 2086695 CCGCTGGCGAGCCGGTGCAGCAAGTTCCGGTTCA 2086662 >seq2 Length=5746313 Score = 134 bits (148), Expect = 3e-26 Identities = 614/961 (64%), Gaps = 26/961 (3%) Strand=Plus/Plus Query 248781 ccTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAAC 248840 ||| ||| ||| |||| ||||| | || || | ||| | | ||| | ||||| || Sbjct 596012 CCTCGACTCCGCCATTGTCTACGACCGTGACTTCAACTACCAATACTTCGGCTTCAAGAC 596071 Query 248841 GCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACAT 248900 ||||| ||| |||||||| || || |||||||||| ||||| || ||||| || Sbjct 596072 TTTGGAGCGATCATATCTCCTGAAGCTTAATGGCAAGATTGTGGAGAGACCACAGCATAT 596131 Query 248901 GTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTA 248960 | | ||||| || ||||| || || || ||||| ||||| || | ||||| || Sbjct 596132 GATCATGCGTGTTGCTGTTGGTATCTGGGGAGACGACATCGAGAGGGTTATTGAGACTTA 596191 Query 248961 CACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGG 249017 || | ||| || | || | ||||| ||| | || || || |||||||| || Sbjct 596192 CAACCTCATGTCCAGCAAGTACT---TCACACACGCCTCTCCTACTCTGTTCAACGCTGG 596248 Query 249018 TACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGA 249077 ||| | | ||||||| || ||||| ||| | | |||| | || ||| | || Sbjct 596249 TACGCCCCAGGCTCAGCTGTCATCTTGCTTCCTTGTCGACATGAAGGATGACAGCATTGA 596308 Query 249078 CGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCG 249136 || ||||||||||| || || || | || | ||| || || | || || || |||| Sbjct 596309 TGGTATTTATGACACCCTCAAGACTTGC-GCCATGATCTCCAAGATGGCCGGTGGTATCG 596367 Query 249137 GTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCA 249196 ||||| | || | || || |||| || || || ||| ||||| || || Sbjct 596368 GTCTCAACATCCACCGTATTCGTGCGACCGGCTCTTATATCGCCGGTACCAACGGTACAT 596427 Query 249197 GTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGG 249256 ||||||| || ||| | ||||| || | ||| || | | | || |||| | Sbjct 596428 CCAATGGTATTGTTCCCATGCTTCGCGTGTTCAACAACACTGCTCGATACGTCGACCAAG 596487 Query 249257 CCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATAT 249313 || | ||| || | || || || ||| | || |||||| ||||| | | Sbjct 596488 GTGGCAACAAGCGACCTGGTGCCTTTGCTATCTATCTCGAGCCCTGGCACTCCGATGTCT 596547 Query 249314 TGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCT 249373 | ||||||||||| | ||||||| | || || || | | || || || || | Sbjct 596548 TTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAAGAGGTCCGCGCTCGCGATCTTT 596607 Query 249374 TCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433 || | ||| ||| | |||| | |||||| || || || |||| || |||| Sbjct 596608 TCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTGTTGAGAAGAACGGAGAGTGGA 596667 Query 249434 CGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACC 249493 ||||| | | || || ||| | ||| |||| | |||||| || ||||| Sbjct 596668 CGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATGTTTACGGCGATGAGTTCGAGG 596727 Query 249494 AAGCCTATAAGAAATACGAATCCAACGGC----ATCGGCAAGACAATCAAGGCTCGGACC 249549 ||| |||| ||||| || | ||| ||| ||| | |||||||| | || Sbjct 596728 CCCTCTACGAGAAGTACGAGGCCGAGGGCCGAGGTCGACAA-AAGATCAAGGCCCAGAAG 596786 Query 249550 CT---TTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTT 249605 || | ||| | | ||||| |||||| ||||| || || | | || | | Sbjct 596787 CTCTGGTATGCTA---TTCTGGAGGCCCAGACCGAGAC-TGGTAACCCTTTCATGCTCTA 596842 Query 249606 CAAAGACGCGTG-CAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAA 249664 ||| ||| | || |||| ||||||||||||| | | || || ||||||||| || | Sbjct 596843 CAAGGAC-CATGCCAACCGCAAGAGTAACCAAAAGAACCTGGGCACCATCCGCAGCTCTA 596901 Query 249665 ATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGG 249724 ||||||| | ||| | ||| |||||||| | || ||| | ||||||||||| ||| Sbjct 596902 ATCTCTGCACCGAGATCATTGAATACTCGGCACCTGATGAGGTCGCCGTCTGCAATTTGG 596961 Query 249725 C 249725 | Sbjct 596962 C 596962 >seq12 Length=1385634 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/229 (70%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 254139 GACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTTCGTCGTTCCAACCC 254198 |||||||||||| || |||||| ||| || ||| | | ||| || ||| Sbjct 680085 GACGTCGTCCGCAACCGCATCAAGGGCTTCGCCCAGAAGAAG-----GTCA--CCCTCCC 680137 Query 254199 GGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCG 254258 || | ||||| ||||||||||||||| |||||||| |||| ||||||| | | |||| Sbjct 680138 CGCCGGCCGCCA--CAAGCTCGTGATCCTCGACGAGGCCGACAGCATGACGTCGGGCGCG 680195 Query 254259 CAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTG 254318 ||| || |||||||| || ||||||| ||||| |||||| || | | | | Sbjct 680196 CAGCAGGCGCTCCGCCGCACCATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCG 680255 Query 254319 TGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCA 254367 |||||| | |||||||||| |||||| || |||||||||| Sbjct 680256 TGCAACCAGAGCAACAAGATCATCGAGCCGCTGCAGTCGCGGTGCGCCA 680304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765973513408