Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 165 2e-35
seq2 134 3e-26
seq12 96.9 7e-15
>seq1
Length=5759619
Score = 165 bits (182), Expect = 2e-35
Identities = 273/394 (69%), Gaps = 29/394 (7%)
Strand=Plus/Minus
Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070
|||| ||| |||| || ||||| || ||||||||||| || ||||||||||| || |||
Sbjct 2087051 TGCTCTTCTACGGGCCGCCCGGCACGGGCAAGACGTCGACGATCCTGGCGCTCGC--GAA 2086994
Query 254071 CC--CTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGA 254128
|||| || || || |||| | | | ||||| ||||||||||| || |||||
Sbjct 2086993 GGAGCTGTACGGACCGGAGATGATGAAGGCGAGGGTGCTAGAGCTGAACGCGTCGGACGA 2086934
Query 254129 ACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGT------CGAT 254182
|| ||| | | |||| || || ||| | ||| ||| | |||| |||
Sbjct 2086933 GCGGGGGATCAGCATCGTGCGGGAGAAGGTGAAGGACTTCGCGCGGATGCAGCTGACGAG 2086874
Query 254183 TTCGTCG------TTCCA-----------ACCCGGCTGTCCGCCTTTCAAGCTCGTGATC 254225
|| || | || ||||| || ||||| |||||| || | |
Sbjct 2086873 CCCGCCGGCGGGGTACCGGGAGCGGGGGTACCCG--TGCCCGCCGTTCAAGATCATCGTG 2086816
Query 254226 CTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAG 254285
|||||||||||||||| ||||||| ||||||||| ||| || || || |||||||||
Sbjct 2086815 CTGGACGAGGCGGACAGCATGACGCAGGACGCGCAGAGCGCGCTGCGGCGGACGATGGAG 2086756
Query 254286 ACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCC 254345
||| || | | ||||| || ||||||||||||||||||||| || |||||||| |
Sbjct 2086755 ACGTACAGCAAGATCACGCGGTTCTGCCTGGTGTGCAACTACGTGACGCGGATCATCGAC 2086696
Query 254346 CCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
|||||||| |||||| |||||| || ||||
Sbjct 2086695 CCGCTGGCGAGCCGGTGCAGCAAGTTCCGGTTCA 2086662
>seq2
Length=5746313
Score = 134 bits (148), Expect = 3e-26
Identities = 614/961 (64%), Gaps = 26/961 (3%)
Strand=Plus/Plus
Query 248781 ccTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAAC 248840
||| ||| ||| |||| ||||| | || || | ||| | | ||| | ||||| ||
Sbjct 596012 CCTCGACTCCGCCATTGTCTACGACCGTGACTTCAACTACCAATACTTCGGCTTCAAGAC 596071
Query 248841 GCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACAT 248900
||||| ||| |||||||| || || |||||||||| ||||| || ||||| ||
Sbjct 596072 TTTGGAGCGATCATATCTCCTGAAGCTTAATGGCAAGATTGTGGAGAGACCACAGCATAT 596131
Query 248901 GTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTA 248960
| | ||||| || ||||| || || || ||||| ||||| || | ||||| ||
Sbjct 596132 GATCATGCGTGTTGCTGTTGGTATCTGGGGAGACGACATCGAGAGGGTTATTGAGACTTA 596191
Query 248961 CACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGG 249017
|| | ||| || | || | ||||| ||| | || || || |||||||| ||
Sbjct 596192 CAACCTCATGTCCAGCAAGTACT---TCACACACGCCTCTCCTACTCTGTTCAACGCTGG 596248
Query 249018 TACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGA 249077
||| | | ||||||| || ||||| ||| | | |||| | || ||| | ||
Sbjct 596249 TACGCCCCAGGCTCAGCTGTCATCTTGCTTCCTTGTCGACATGAAGGATGACAGCATTGA 596308
Query 249078 CGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCG 249136
|| ||||||||||| || || || | || | ||| || || | || || || ||||
Sbjct 596309 TGGTATTTATGACACCCTCAAGACTTGC-GCCATGATCTCCAAGATGGCCGGTGGTATCG 596367
Query 249137 GTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCA 249196
||||| | || | || || |||| || || || ||| ||||| || ||
Sbjct 596368 GTCTCAACATCCACCGTATTCGTGCGACCGGCTCTTATATCGCCGGTACCAACGGTACAT 596427
Query 249197 GTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGG 249256
||||||| || ||| | ||||| || | ||| || | | | || |||| |
Sbjct 596428 CCAATGGTATTGTTCCCATGCTTCGCGTGTTCAACAACACTGCTCGATACGTCGACCAAG 596487
Query 249257 CCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATAT 249313
|| | ||| || | || || || ||| | || |||||| ||||| | |
Sbjct 596488 GTGGCAACAAGCGACCTGGTGCCTTTGCTATCTATCTCGAGCCCTGGCACTCCGATGTCT 596547
Query 249314 TGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCT 249373
| ||||||||||| | ||||||| | || || || | | || || || || |
Sbjct 596548 TTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAAGAGGTCCGCGCTCGCGATCTTT 596607
Query 249374 TCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGA 249433
|| | ||| ||| | |||| | |||||| || || || |||| || ||||
Sbjct 596608 TCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTGTTGAGAAGAACGGAGAGTGGA 596667
Query 249434 CGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACC 249493
||||| | | || || ||| | ||| |||| | |||||| || |||||
Sbjct 596668 CGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATGTTTACGGCGATGAGTTCGAGG 596727
Query 249494 AAGCCTATAAGAAATACGAATCCAACGGC----ATCGGCAAGACAATCAAGGCTCGGACC 249549
||| |||| ||||| || | ||| ||| ||| | |||||||| | ||
Sbjct 596728 CCCTCTACGAGAAGTACGAGGCCGAGGGCCGAGGTCGACAA-AAGATCAAGGCCCAGAAG 596786
Query 249550 CT---TTTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTT 249605
|| | ||| | | ||||| |||||| ||||| || || | | || | |
Sbjct 596787 CTCTGGTATGCTA---TTCTGGAGGCCCAGACCGAGAC-TGGTAACCCTTTCATGCTCTA 596842
Query 249606 CAAAGACGCGTG-CAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAA 249664
||| ||| | || |||| ||||||||||||| | | || || ||||||||| || |
Sbjct 596843 CAAGGAC-CATGCCAACCGCAAGAGTAACCAAAAGAACCTGGGCACCATCCGCAGCTCTA 596901
Query 249665 ATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGG 249724
||||||| | ||| | ||| |||||||| | || ||| | ||||||||||| |||
Sbjct 596902 ATCTCTGCACCGAGATCATTGAATACTCGGCACCTGATGAGGTCGCCGTCTGCAATTTGG 596961
Query 249725 C 249725
|
Sbjct 596962 C 596962
>seq12
Length=1385634
Score = 96.9 bits (106), Expect = 7e-15
Identities = 160/229 (70%), Gaps = 9/229 (4%)
Strand=Plus/Plus
Query 254139 GACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTTCGTCGTTCCAACCC 254198
|||||||||||| || |||||| ||| || ||| | | ||| || |||
Sbjct 680085 GACGTCGTCCGCAACCGCATCAAGGGCTTCGCCCAGAAGAAG-----GTCA--CCCTCCC 680137
Query 254199 GGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCG 254258
|| | ||||| ||||||||||||||| |||||||| |||| ||||||| | | ||||
Sbjct 680138 CGCCGGCCGCCA--CAAGCTCGTGATCCTCGACGAGGCCGACAGCATGACGTCGGGCGCG 680195
Query 254259 CAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTG 254318
||| || |||||||| || ||||||| ||||| |||||| || | | | |
Sbjct 680196 CAGCAGGCGCTCCGCCGCACCATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCG 680255
Query 254319 TGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCA 254367
|||||| | |||||||||| |||||| || ||||||||||
Sbjct 680256 TGCAACCAGAGCAACAAGATCATCGAGCCGCTGCAGTCGCGGTGCGCCA 680304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073765973513408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |