Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq8 136 3e-27
seq4 109 4e-19
seq3 102 6e-17
>seq8
Length=2477967
Score = 136 bits (150), Expect = 3e-27
Identities = 158/212 (75%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || |||||||||||||| |||||||||||| || ||| |||| || || ||
Sbjct 2273351 GTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 2273292
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| |||||||| ||||| |||||||||||||| || | || ||||||||| || ||
Sbjct 2273291 CTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTT 2273232
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | |||| | ||||||||| | ||| || |||||||||||
Sbjct 2273231 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 2273172
Query 45313 CAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343
|| ||||| || ||||| |||||| ||||||
Sbjct 2273171 GAGGGTCTTGACGAAGATCTGCATGATTGCCT 2273140
>seq4
Length=3212107
Score = 109 bits (120), Expect = 4e-19
Identities = 151/210 (72%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || |||||||||||||| ||||||||||| || ||| |||| || |||||
Sbjct 2383109 GTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCAAGTTG 2383050
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| ||||| || ||||| ||||||||||| || || | |||||||||||| || ||
Sbjct 2383049 CTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 2382990
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | |||| ||| ||||| | || || |||||||| ||
Sbjct 2382989 GGACTTCACGTTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 2382930
Query 45313 CAGAGTCTTCACAAAGATTTGCAT-GTTGC 45341
|| |||||||| ||||| ||||| |||||
Sbjct 2382929 GAGGGTCTTCACGAAGATCTGCATGGTTGC 2382900
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||| ||||||||||||||| || || | || ||||| ||
Sbjct 2383402 GTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTACGTCCATCCTCCAGCTG 2383343
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| ||||| ||||||||||| || || | ||||||||||| ||| ||
Sbjct 2383342 CTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGAATCTT 2383283
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | |||| ||| ||||| | |||||| |||||||| ||
Sbjct 2383282 CGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTAATGGTCTTGCCAGT 2383223
Query 45313 CAGAGTCTTCAC 45324
|| ||||| ||
Sbjct 2383222 GAGGGTCTTGAC 2383211
>seq3
Length=5106013
Score = 102 bits (112), Expect = 6e-17
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| |||||||||||| ||| || | || || || || || || || || |
Sbjct 1582841 CCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 1582900
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
||| || |||||||||||||| | |||||||||||| || || ||||||
Sbjct 1582901 TCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGT 1582960
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | | |||| ||||||||| | ||| || ||||||||||| || |||||||| |
Sbjct 1582961 CGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 1583020
Query 45327 AGATTTGCA 45335
|||| ||||
Sbjct 1583021 AGATCTGCA 1583029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075050735651
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |