Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 334 7e-87 seq4 125 6e-24 seq8 96.9 3e-15 >seq2 Length=5746313 Score = 334 bits (370), Expect = 7e-87 Identities = 1223/1892 (65%), Gaps = 54/1892 (3%) Strand=Plus/Minus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 || || || ||||| || | | ||||| | | |||||| || || |||||||||||| Sbjct 597883 TCAACAGTGAACTGGATAGGCTGGGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGTC 597824 Query 22169 TTCAGACCCATCTTCCA-CGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227 ||||| || | |||||| | ||| || || || ||| | || || | || Sbjct 597823 TTCAGGCCTAGCTTCCAGCCCGTGAAG-TGCATGCTCGTGATCTTGCCCATGGTGGG--- 597768 Query 22228 GTCC---ATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 |||| |||| | || || ||||| || ||||| || || || || ||||| || Sbjct 597767 GTCCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAAGGCACCACGGTCGGCAGC 597708 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 ||| | | | || ||| || || ||||| |||||||||||||| | ||||||| Sbjct 597707 CATCTGCACAACGGTTCGCTGAGAGATCTCCCACACGGTCTTGTACAGGGCCTTGATCTC 597648 Query 22345 TAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 ||| || | | || | |||||| ||| || | ||||| ||| || | Sbjct 597647 CGCCGGAAT-GTTGGGAATGTTCTGGATGGAACCACCCTCAGCAATGATACGATTCTTCA 597589 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||| ||||| ||| ||| || | || || | ||| |||| ||||| | Sbjct 597588 TGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCT 597529 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | |||||||| | | ||| || || ||| ||||||||||| | || |||||| | | Sbjct 597528 GGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACACT 597469 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| ||||| ||||||| || || || ||||| || |||| || || || Sbjct 597468 CGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACTGT 597409 Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACTCTT-GAGCATCGACCAGTCCCACAGATCGG 22640 | | | || | || |||| | | ||||| ||| || ||||||||| || || | Sbjct 597408 TGCGGACACCATTCTGCTTGA---TCTGCTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAG 597352 Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACGCCGCGACTCGCCGGGCTGCC 22698 | || || || || |||||| |||||||| | | || | | || | || ||| Sbjct 597351 ATGGGGTGACGTT---CCACATGTCGTATTGTAGGATACCCTGGGAGACA--GGTGAGCC 597297 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 ||||| || ||| || || | | ||| | || | || ||| || || Sbjct 597296 CTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAAGCTGTCAAGGCACC 597237 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGCGACGCTTTCGTA 22815 | || || ||||||||||| | |||||| | | || ||| || || || | Sbjct 597236 ATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGG-GAGACT--CGAA 597180 Query 22816 CGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875 ||||| || | | || || || || | ||| || || || | ||||| || || Sbjct 597179 AGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGATGGGACG 597120 Query 22876 GTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTG 22931 || | || || || |||| ||| | | ||| || | || ||| || Sbjct 597119 GTGTCGCATGTTG----CTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGACATCAATGA 597064 Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991 | |||||| ||| | ||| | | ||| | | |||||| || | Sbjct 597063 TCTTGTTCAGGTTGCGCACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAGA 597004 Query 22992 CGCCC-GATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCA 23048 ||||| | ||||| | || ||| | | || | ||||| | |||||| ||||| | Sbjct 597003 CGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCAAATTGCAGACGGCGA 596944 Query 23049 CCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATT---GCTACACTTTATCG 23105 |||| || | || ||| || | || ||||| || ||||| ||| | || | Sbjct 596943 CCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCAGAGATTAGAGCTGCGG---ATGG 596887 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTG-CACGAATCCTTGTAGAGCATGTACGGC 23164 |||||| || | ||||| || || || ||| || | ||||||||||||||| | || Sbjct 596886 TGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-TCCTTGTAGAGCATGAAAGGG 596828 Query 23165 GTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACAC- 23222 | || |||||| ||| | ||| | || || ||| | |||| || | || | Sbjct 596827 TTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGATCTTT 596768 Query 23223 -GTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCG 23281 |||| || | | ||| || |||||||||| | ||| | || || || || | ||| Sbjct 596767 TGTCG-ACCT--CGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCG 596711 Query 23282 TAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT 23341 ||| ||||||||||| || | | | || ||||| || ||||| | || || Sbjct 596710 TAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTC 596651 Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 ||||| ||| |||| || ||||| || ||||| || || ||| || ||||| ||||| Sbjct 596650 TCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGG 596591 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 ||||| ||||| || ||||||| | ||||| || || || || || | ||||| Sbjct 596590 ACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAG 596531 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 |||||||| || | ||||| || || |||| ||| ||||| || || |||||||| || Sbjct 596530 GGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCTTGGTCGACGTATCGA 596471 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 || ||||||||| |||| | ||||| || || | ||| ||||| | ||| || Sbjct 596470 GCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCG 596411 Query 23582 GCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGAT 23641 || | | || || | || |||| ||| | || || ||| || || ||| || Sbjct 596410 GCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCGGCCATC 596351 Query 23642 TTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTG 23701 || || ||||| ||||| || || ||||| || || || || |||||||| || || Sbjct 596350 TTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTC 596291 Query 23702 GTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTC 23761 | |||| | ||| || || |||| || || | ||||||| | || |||||| || Sbjct 596290 ATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTA 596231 Query 23762 GGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCA 23821 || |||||| || ||||| | ||||| || ||||| || || || | || Sbjct 596230 GGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTAAGTCTCAATAACCCTCTCG 596171 Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881 ||||| ||||| ||||| | || || ||||| ||||| | || |||||||| || Sbjct 596170 ATGTCGTCTCCCCAGATACCAACAGCAACACGCATGATCATATGCTGTGGTCTCTCCACA 596111 Query 23882 GTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCA 23941 | ||| |||| || | |||||||| || | || || || || || || || | Sbjct 596110 ATCTTGCCATTAAGCTTCAGGAGATATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGG 596051 Query 23942 TAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||||| |||||||| |||| || ||||| || Sbjct 596050 TAGTTGAAGTCACGGTCGTAGACAATGGCGGA 596019 Score = 129 bits (142), Expect = 5e-25 Identities = 215/311 (69%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| ||||| || ||||| ||||| ||||| || ||| || | || || ||| Sbjct 3731255 TCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGC 3731314 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | ||||| || || |||||||| |||||||| || |||||||||||| ||||| |||| Sbjct 3731315 TCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGTTGATCTCGCGTGACG 3731374 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 |||| || || ||||| ||||| ||||| ||| ||| ||| | ||| || | Sbjct 3731375 AGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTCCCACCTGAAGAATCGCCCCAGCA 3731434 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 ||| || | | || ||||| || || ||||| || || | ||||| | || | Sbjct 3731435 AGGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATTGAGCAAGAGTTCTTGACAG 3731494 Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278 | ||||| || ||| |||| || |||||| | | ||| | |||||||||| Sbjct 3731495 AGGCCCTCCCTTGCGCCCTGCTGGGAATGAACTCCAACCTCATGAAGCAATACATTGAGT 3731554 Query 58279 TTGTTGCCGAC 58289 ||||||| ||| Sbjct 3731555 TTGTTGCGGAC 3731565 Score = 100 bits (110), Expect = 3e-16 Identities = 225/334 (67%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| ||||| || || ||||| | |||||| | |||||| Sbjct 3730793 ATCTGGCAGATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTG 3730852 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| ||| ||| ||| | | |||| || ||||| | | || || Sbjct 3730853 TCCAAGGACCTGCACGACTGGAACAACAGAATCAACGAGGATGAGAAATACTTCATCTCC 3730912 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || || || ||||| || || || || || |||||||| |||||||| || Sbjct 3730913 CACATCCTTGCCTTCTTTGCCGCGTCAGACGGCATCGTCAACGAGAACTTGGTCGAGCGA 3730972 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || || | | |||||| ||||||| ||||| || || | || Sbjct 3730973 TTCAGCGGCGAGGTCCAGATTCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGATG 3731032 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACG 57864 || ||| | || || || | || || || ||||| || || ||| | ||||| | || Sbjct 3731033 GAGAACATACACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCACA 3731092 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAAC 57898 | | | | || || ||||||||||| ||||| Sbjct 3731093 CAGCGGA-CATAC-CTCTTCAACGCGATTGAAAC 3731124 >seq4 Length=3212107 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || ||||||||| |||| ||||| |||| Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 || | | | || | ||||| ||| || | | |||||||||||| | || || || Sbjct 2383715 GATACTATTGACAACGTCAA---GAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGAT 2383771 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || |||||||| || || |||||||| |||||||| || || ||||||| || Sbjct 2383772 CAACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTAC 2383831 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||| || ||||| || ||||| ||||| || | || | |||||| Sbjct 2383832 AACATTCAGAAGGAATCAACACTTCACCTGGTTCTCCGTCTCCGTGGCGGT 2383882 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || || ||| | || || || ||||||||| ||| Sbjct 2383209 TCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCATCG 2383268 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| || || |||||||| ||| | ||||| ||||| ||||| | | Sbjct 2383269 ACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCGCCTGACCAACAGCGATTGA 2383328 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAACATTCAAAAA 31381 | |||||||| || ||| |||| || | | | || | ||| || ||||||||||| Sbjct 2383329 TCTTCGCTGGTAAGCAGCTGGAGGA-TGGACGTACCCTCTCCGACTACAACATTCAAAAG 2383387 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| || || || || | ||| | || |||| Sbjct 2383388 GAATCCACTCTCCACCTTGTCCTGCGTCTGCGTGGTGGTA 2383427 >seq8 Length=2477967 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || ||||| || |||||| | || || || Sbjct 2273143 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGT 2273202 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||||||| | ||||||| Sbjct 2273203 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCG 2273262 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||| ||||| | || ||||| ||||| ||| | || ||| Sbjct 2273263 ACCAACAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGAC 2273303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766227265520