Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2 334 7e-87
seq4 125 6e-24
seq8 96.9 3e-15
>seq2
Length=5746313
Score = 334 bits (370), Expect = 7e-87
Identities = 1223/1892 (65%), Gaps = 54/1892 (3%)
Strand=Plus/Minus
Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168
|| || || ||||| || | | ||||| | | |||||| || || ||||||||||||
Sbjct 597883 TCAACAGTGAACTGGATAGGCTGGGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGTC 597824
Query 22169 TTCAGACCCATCTTCCA-CGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227
||||| || | |||||| | ||| || || || ||| | || || | ||
Sbjct 597823 TTCAGGCCTAGCTTCCAGCCCGTGAAG-TGCATGCTCGTGATCTTGCCCATGGTGGG--- 597768
Query 22228 GTCC---ATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284
|||| |||| | || || ||||| || ||||| || || || || ||||| ||
Sbjct 597767 GTCCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAAGGCACCACGGTCGGCAGC 597708
Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344
||| | | | || ||| || || ||||| |||||||||||||| | |||||||
Sbjct 597707 CATCTGCACAACGGTTCGCTGAGAGATCTCCCACACGGTCTTGTACAGGGCCTTGATCTC 597648
Query 22345 TAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403
||| || | | || | |||||| ||| || | ||||| ||| || |
Sbjct 597647 CGCCGGAAT-GTTGGGAATGTTCTGGATGGAACCACCCTCAGCAATGATACGATTCTTCA 597589
Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463
| | ||| ||||| ||| ||| || | || || | ||| |||| ||||| |
Sbjct 597588 TGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCACCT 597529
Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523
| |||||||| | | ||| || || ||| ||||||||||| | || |||||| | |
Sbjct 597528 GGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGCTCGAAACACT 597469
Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583
| ||||| ||||| ||||||| || || || ||||| || |||| || || ||
Sbjct 597468 CGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGACTGT 597409
Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACTCTT-GAGCATCGACCAGTCCCACAGATCGG 22640
| | | || | || |||| | | ||||| ||| || ||||||||| || || |
Sbjct 597408 TGCGGACACCATTCTGCTTGA---TCTGCTCTTTGAGGCTCTCCCAGTCCCAAAGGTCAG 597352
Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACGCCGCGACTCGCCGGGCTGCC 22698
| || || || || |||||| |||||||| | | || | | || | || |||
Sbjct 597351 ATGGGGTGACGTT---CCACATGTCGTATTGTAGGATACCCTGGGAGACA--GGTGAGCC 597297
Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758
||||| || ||| || || | | ||| | || | || ||| || ||
Sbjct 597296 CTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAAGCTGTCAAGGCACC 597237
Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGCGACGCTTTCGTA 22815
| || || ||||||||||| | |||||| | | || ||| || || || |
Sbjct 597236 ATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGG-GAGACT--CGAA 597180
Query 22816 CGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875
||||| || | | || || || || | ||| || || || | ||||| || ||
Sbjct 597179 AGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGATGGGACG 597120
Query 22876 GTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTG 22931
|| | || || || |||| ||| | | ||| || | || ||| ||
Sbjct 597119 GTGTCGCATGTTG----CTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGACATCAATGA 597064
Query 22932 TTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA 22991
| |||||| ||| | ||| | | ||| | | |||||| || |
Sbjct 597063 TCTTGTTCAGGTTGCGCACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAGA 597004
Query 22992 CGCCC-GATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCA 23048
||||| | ||||| | || ||| | | || | ||||| | |||||| ||||| |
Sbjct 597003 CGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCAAATTGCAGACGGCGA 596944
Query 23049 CCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATT---GCTACACTTTATCG 23105
|||| || | || ||| || | || ||||| || ||||| ||| | || |
Sbjct 596943 CCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCAGAGATTAGAGCTGCGG---ATGG 596887
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTG-CACGAATCCTTGTAGAGCATGTACGGC 23164
|||||| || | ||||| || || || ||| || | ||||||||||||||| | ||
Sbjct 596886 TGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-TCCTTGTAGAGCATGAAAGGG 596828
Query 23165 GTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACAC- 23222
| || |||||| ||| | ||| | || || ||| | |||| || | || |
Sbjct 596827 TTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGCTTCTGGGCCTTGATCTTT 596768
Query 23223 -GTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCG 23281
|||| || | | ||| || |||||||||| | ||| | || || || || | |||
Sbjct 596767 TGTCG-ACCT--CGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCG 596711
Query 23282 TAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT 23341
||| ||||||||||| || | | | || ||||| || ||||| | || ||
Sbjct 596710 TAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTCTTC 596651
Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401
||||| ||| |||| || ||||| || ||||| || || ||| || ||||| |||||
Sbjct 596650 TCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCGCGG 596591
Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461
||||| ||||| || ||||||| | ||||| || || || || || | |||||
Sbjct 596590 ACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAGACATCGGAGTGCCAG 596531
Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521
|||||||| || | ||||| || || |||| ||| ||||| || || |||||||| ||
Sbjct 596530 GGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCTTGGTCGACGTATCGA 596471
Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581
|| ||||||||| |||| | ||||| || || | ||| ||||| | ||| ||
Sbjct 596470 GCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTGGTACCG 596411
Query 23582 GCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGAT 23641
|| | | || || | || |||| ||| | || || ||| || || ||| ||
Sbjct 596410 GCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCGGCCATC 596351
Query 23642 TTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTG 23701
|| || ||||| ||||| || || ||||| || || || || |||||||| || ||
Sbjct 596350 TTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACCATCAATGCTGTCATCCTTC 596291
Query 23702 GTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTC 23761
| |||| | ||| || || |||| || || | ||||||| | || |||||| ||
Sbjct 596290 ATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTGAACAGAGTA 596231
Query 23762 GGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCA 23821
|| |||||| || ||||| | ||||| || ||||| || || || | ||
Sbjct 596230 GGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTAAGTCTCAATAACCCTCTCG 596171
Query 23822 ATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881
||||| ||||| ||||| | || || ||||| ||||| | || |||||||| ||
Sbjct 596170 ATGTCGTCTCCCCAGATACCAACAGCAACACGCATGATCATATGCTGTGGTCTCTCCACA 596111
Query 23882 GTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCA 23941
| ||| |||| || | |||||||| || | || || || || || || || |
Sbjct 596110 ATCTTGCCATTAAGCTTCAGGAGATATGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGG 596051
Query 23942 TAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
||||| |||||||| |||| || ||||| ||
Sbjct 596050 TAGTTGAAGTCACGGTCGTAGACAATGGCGGA 596019
Score = 129 bits (142), Expect = 5e-25
Identities = 215/311 (69%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038
|||| ||||| || ||||| ||||| ||||| || ||| || | || || |||
Sbjct 3731255 TCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGC 3731314
Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098
| ||||| || || |||||||| |||||||| || |||||||||||| ||||| ||||
Sbjct 3731315 TCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGTTGATCTCGCGTGACG 3731374
Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158
|||| || || ||||| ||||| ||||| ||| ||| ||| | ||| || |
Sbjct 3731375 AGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTCCCACCTGAAGAATCGCCCCAGCA 3731434
Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218
||| || | | || ||||| || || ||||| || || | ||||| | || |
Sbjct 3731435 AGGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATTGAGCAAGAGTTCTTGACAG 3731494
Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278
| ||||| || ||| |||| || |||||| | | ||| | ||||||||||
Sbjct 3731495 AGGCCCTCCCTTGCGCCCTGCTGGGAATGAACTCCAACCTCATGAAGCAATACATTGAGT 3731554
Query 58279 TTGTTGCCGAC 58289
||||||| |||
Sbjct 3731555 TTGTTGCGGAC 3731565
Score = 100 bits (110), Expect = 3e-16
Identities = 225/334 (67%), Gaps = 7/334 (2%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| ||||| || || ||||| | |||||| | ||||||
Sbjct 3730793 ATCTGGCAGATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTG 3730852
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| ||||| ||| ||| ||| | | |||| || ||||| | | || ||
Sbjct 3730853 TCCAAGGACCTGCACGACTGGAACAACAGAATCAACGAGGATGAGAAATACTTCATCTCC 3730912
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||| | | || || || ||||| || || || || || |||||||| |||||||| ||
Sbjct 3730913 CACATCCTTGCCTTCTTTGCCGCGTCAGACGGCATCGTCAACGAGAACTTGGTCGAGCGA 3730972
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || || || | | |||||| ||||||| ||||| || || | ||
Sbjct 3730973 TTCAGCGGCGAGGTCCAGATTCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGATG 3731032
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACG 57864
|| ||| | || || || | || || || ||||| || || ||| | ||||| | ||
Sbjct 3731033 GAGAACATACACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCACA 3731092
Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAAC 57898
| | | | || || ||||||||||| |||||
Sbjct 3731093 CAGCGGA-CATAC-CTCTTCAACGCGATTGAAAC 3731124
>seq4
Length=3212107
Score = 125 bits (138), Expect = 6e-24
Identities = 168/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || ||||||||| |||| ||||| ||||
Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714
Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309
|| | | | || | ||||| ||| || | | |||||||||||| | || || ||
Sbjct 2383715 GATACTATTGACAACGTCAA---GAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGAT 2383771
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|| |||||||| || || |||||||| |||||||| || || ||||||| ||
Sbjct 2383772 CAACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTAC 2383831
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|||||||| || ||||| || ||||| ||||| || | || | ||||||
Sbjct 2383832 AACATTCAGAAGGAATCAACACTTCACCTGGTTCTCCGTCTCCGTGGCGGT 2383882
Score = 96.9 bits (106), Expect = 3e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| ||||| || || ||||| || || ||| | || || || ||||||||| |||
Sbjct 2383209 TCGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAGTCGTCCGACACCATCG 2383268
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | ||||| || || |||||||| ||| | ||||| ||||| ||||| | |
Sbjct 2383269 ACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCGCCTGACCAACAGCGATTGA 2383328
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAACATTCAAAAA 31381
| |||||||| || ||| |||| || | | | || | ||| || |||||||||||
Sbjct 2383329 TCTTCGCTGGTAAGCAGCTGGAGGA-TGGACGTACCCTCTCCGACTACAACATTCAAAAG 2383387
Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| ||||| || || || || | ||| | || ||||
Sbjct 2383388 GAATCCACTCTCCACCTTGTCCTGCGTCTGCGTGGTGGTA 2383427
>seq8
Length=2477967
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| || || ||||| || |||||| | || || ||
Sbjct 2273143 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGT 2273202
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | ||||| | || ||||||||||||| | |||||||
Sbjct 2273203 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCCG 2273262
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|||| ||||| | || ||||| ||||| ||| | || |||
Sbjct 2273263 ACCAACAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGAC 2273303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766227265520
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