Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 8e-14 >seq2 Length=5746313 Score = 93.3 bits (102), Expect = 8e-14 Identities = 177/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || || || |||||||||| || || ||| || || ||||||||||| Sbjct 596368 CCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACCA 596309 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGT 94904 |||||||| ||||| | | | | | ||||||||| || || || || | || | | || Sbjct 596308 TCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGC-GT 596250 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| || ||||| || || || || || || || || | || |||||||| | || Sbjct 596249 ACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTA 596190 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 || ||||| || | |||||| ||| || || ||||| |||||||| ||||| Sbjct 596189 AGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACGCATGATCAT 596130 Query 95025 GTCCTGAGGGCGCTCAAC 95042 | ||| || | ||| || Sbjct 596129 ATGCTGTGGTCTCTCCAC 596112 Score = 87.8 bits (96), Expect = 4e-12 Identities = 119/165 (72%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 |||| ||| || ||||| || |||||||| | |||| ||||| ||||| | || || Sbjct 596762 ACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCGCCGTAAACATC 596703 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---AC 94508 || |||||||||||||| | ||||||||| || | ||| || || |||| || Sbjct 596702 GGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCCA---CTCTCCGTTCTTCTCAAC 596646 Query 94509 TCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 | | |||||||||||| | | ||||| || |||||||||| Sbjct 596645 ACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAAGATC 596601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583606949605