Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 224 1e-53 >seq2 Length=5746313 Score = 224 bits (248), Expect = 1e-53 Identities = 638/971 (66%), Gaps = 16/971 (2%) Strand=Plus/Minus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| |||| ||| || ||||| ||||||| || ||| |||| || ||||| ||||| Sbjct 596966 AGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCA 596907 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCAT 63066 |||||| | ||| || || | || | ||| |||||||| ||| || | | Sbjct 596906 GAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-T 596848 Query 63067 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63126 |||| || || ||||| || ||||||| || |||| | || | ||| || | ||||| Sbjct 596847 CCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA 596788 Query 63127 CGACTC-GAGCCTTTATTATAGATTTGT--ATCTCCTTTCTCTT--TCGTA--TAGAGTA 63179 | || | ||||| || | |||| | ||| ||| ||||| | ||| Sbjct 596787 -GCTTCTGGGCCTTGATCTT----TTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTA 596733 Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACAC 63239 | | |||||||| || || |||||| | ||| | ||| || |||| || ||| Sbjct 596732 GAGGGCC--TCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCAC 596675 Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63299 || | || ||||||||||| | || || |||||||| |||||||| |||||||| || Sbjct 596674 ATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGG 596615 Query 63300 GCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 || | || ||||| | | | || || || || |||||| ||||| ||| Sbjct 596614 GCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGG 596555 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 ||| | | | ||| || ||||| || || | || || || | | ||||| || ||| Sbjct 596554 AACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTG 596495 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || || || || | ||||| ||| ||||| || | || | | ||| |||| |||| Sbjct 596494 TTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATA 596435 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 || || ||| |||| |||||||||| |||||| || | ||||||||| || Sbjct 596434 CCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATG 596375 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 ||||| || || || ||||| || ||||| | ||||| || | |||||||| Sbjct 596374 TTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAA 596315 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 || || || ||||| ||||| |||||| | || || || |||| || | Sbjct 596314 ATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGG 596255 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | || || || || || | |||||||| ||||| || || | || || | || Sbjct 596254 GGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGG 596195 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 ||||| ||||||||| | || || || | || || || || |||||||| Sbjct 596194 TTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACGCATG 596135 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | ||| ||||| ||||| || ||||| ||| || | |||| | || ||| ||| Sbjct 596134 ATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCGCTCC 596075 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 63899 ||||| || || || || || | ||| ||||| || ||||| | ||| | || | | Sbjct 596074 AAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCGGAGTCG 596015 Query 63900 AGCTTATCCTT 63910 || | ||||| Sbjct 596014 AGGTCCTCCTT 596004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817355945680