Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 230 3e-55 >seq2 Length=5746313 Score = 230 bits (254), Expect = 3e-55 Identities = 643/975 (66%), Gaps = 24/975 (2%) Strand=Plus/Minus Query 65741 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 65800 ||| |||| ||| || ||||| ||||||| || ||| |||| || ||||| ||||| Sbjct 596966 AGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCA 596907 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCAT 65859 |||||| | |||||| || | || | ||| |||||||| ||| || | | Sbjct 596906 GAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-T 596848 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 |||| || || ||||| || ||||||| || |||| | || | ||| || | ||||| Sbjct 596847 CCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA 596788 Query 65920 CGACTC-GAGCCTTTATTATAGATTTGT--ATCTCTTTTCTCTT--TCGTA--TAGTGTA 65972 | || | ||||| || | |||| | ||| ||| ||||| | ||| Sbjct 596787 -GCTTCTGGGCCTTGATCTT----TTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTA 596733 Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 | | |||||||| || || |||||| | ||| ||||| || |||| || ||| Sbjct 596732 GAGGGCC--TCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCAC 596675 Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 66092 || | || ||||||||||| | || || |||||||| |||||||| |||||||| || Sbjct 596674 ATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGG 596615 Query 66093 GCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 66152 || | || | ||| | | | || || || || |||||| ||||| ||| Sbjct 596614 GCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGG 596555 Query 66153 AACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 66212 ||| | | | ||| | ||||| || || | || || || | | ||||| || ||| Sbjct 596554 AACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTG 596495 Query 66213 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 66272 || || || || || | ||||| ||| ||||| || | || | | ||| |||| |||| Sbjct 596494 TTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATA 596435 Query 66273 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATT 66332 |||||||||||||| ||||| |||| |||||| || | ||||||||| || Sbjct 596434 CCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATG 596375 Query 66333 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 66392 ||||| || || || ||||| || ||||| | ||||| || | || ||||| Sbjct 596374 TTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAA 596315 Query 66393 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 66452 || || || || || |||||| |||||| | || || || |||| | ||| | Sbjct 596314 ATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACA---GCTGA-GC 596259 Query 66453 CT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 66508 || || || || || || | |||||||| ||||| || || | || || | Sbjct 596258 CTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACAT 596199 Query 66509 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 66568 || ||||| ||||||||| | || || || | || || || || ||||| Sbjct 596198 GAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACG 596139 Query 66569 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 66628 ||| | ||| ||||| ||||| || || |||||| || | |||| | || ||| Sbjct 596138 CATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCG 596079 Query 66629 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 66688 |||||||| || || || || || | ||| ||||| || ||||| | ||| | || Sbjct 596078 CTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCGGA 596019 Query 66689 GTTGAGTTTATCCTT 66703 || ||| | ||||| Sbjct 596018 GTCGAGGTCCTCCTT 596004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172544958040