Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1 178 1e-39 >seq1 Length=5759619 Score = 178 bits (196), Expect = 1e-39 Identities = 447/682 (66%), Gaps = 58/682 (9%) Strand=Plus/Minus Query 20877 ATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACG 20936 |||| ||||| ||| ||||| ||||| || | |||||| | | |||| | || ||| Sbjct 2010572 ATCTCCAGCCCCGGGAACGGCCGCGGCTCCCGCGCCAGCTGCACCCGCAGCGCCTCGACG 2010513 Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC 20996 |||| ||| ||||| ||||| |||| | |||| | | ||||| ||| || Sbjct 2010512 TGGTCCGCGTACACGTGCGCGTCGCCCATGACGTGCGTCAGGCTCCCCGGCACCAGCTCC 2010453 Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 | |||| || | || | |||||| || |||||||| |||||||| ||||| ||||| Sbjct 2010452 GCCGCGTGCGCCACCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAACGGCACCCCC 2010393 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG------------------- 21097 || ||||||||| | | |||||||||||||||| ||| Sbjct 2010392 AGCCCCATGTCGCAGCTGCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTCTGCTTGGTC 2010333 Query 21098 -------------------------CTCCCCCCGAGC----CACGTAAAACTGACACAAA 21128 |||||| || | |||||| ||||| || Sbjct 2010332 GTCGTCGTCGCCGCCCCCGTCGCCGCTCCCCGCGGGTACGACACGTAGAACTGCGCGAAC 2010273 Query 21129 ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACG 21188 | ||| || || || || |||||| | |||||||| ||||||||||||| || ||| Sbjct 2010272 ATGTGGCACGGCGGCAGCGCCATCTTGCCCAGGTCCGCCGGGTTCCACGCGCTCAGCACG 2010213 Query 21189 ATGCGCCGATCGTG-GGGC-CGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCA 21246 |||||||| |||| |||| || | | || | |||||| | ||||||||| | Sbjct 2010212 ATGCGCCGGTCGTACGGGCTCGTCCGCAGCTTG--TGCACCACCTCGGCCAGCTGGTCGA 2010155 Query 21247 CCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACT 21306 | ||||| ||| |||||| || | || || |||| ||||||| || || | ||||| Sbjct 2010154 CGCCCTGGCCCGCGTAGTCGGTCGCCGCGTCCACGTACGCCGCCCCGAAGTGCCGCCACT 2010095 Query 21307 GGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG-CC 21365 |||||||||||||||| ||||| || ||| | |||| || ||||| ||| | || Sbjct 2010094 GGAACCCGTACACCGGGCCCAGGTCCCCCACCGCCCGGTGGCC-CAGCCCCACGCTGTCC 2010036 Query 21366 AAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTG 21425 | || |||| ||||||| ||||||| || || || ||| | | || | | || Sbjct 2010035 AGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACCCCG-GCCTCG-CTGAGCGCCA 2009978 Query 21426 GAGTCG--GTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483 | | || ||| |||| | |||||||||| |||| |||| || ||| | |||| Sbjct 2009977 GCGACGACGTGTTGCCCGCCACGAACCACAGCAGCTCCGCCACCACCGCCCGCAGGAACA 2009918 Query 21484 CCCTTTTGGTGGTTAACAGAGG 21505 ||| |||||||| | ||| || Sbjct 2009917 CCCGCTTGGTGGTCAGCAGCGG 2009896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775838380880