Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq1 178 1e-39
>seq1
Length=5759619
Score = 178 bits (196), Expect = 1e-39
Identities = 447/682 (66%), Gaps = 58/682 (9%)
Strand=Plus/Minus
Query 20877 ATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACG 20936
|||| ||||| ||| ||||| ||||| || | |||||| | | |||| | || |||
Sbjct 2010572 ATCTCCAGCCCCGGGAACGGCCGCGGCTCCCGCGCCAGCTGCACCCGCAGCGCCTCGACG 2010513
Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC 20996
|||| ||| ||||| ||||| |||| | |||| | | ||||| ||| ||
Sbjct 2010512 TGGTCCGCGTACACGTGCGCGTCGCCCATGACGTGCGTCAGGCTCCCCGGCACCAGCTCC 2010453
Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056
| |||| || | || | |||||| || |||||||| |||||||| ||||| |||||
Sbjct 2010452 GCCGCGTGCGCCACCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAACGGCACCCCC 2010393
Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG------------------- 21097
|| ||||||||| | | |||||||||||||||| |||
Sbjct 2010392 AGCCCCATGTCGCAGCTGCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTCTGCTTGGTC 2010333
Query 21098 -------------------------CTCCCCCCGAGC----CACGTAAAACTGACACAAA 21128
|||||| || | |||||| ||||| ||
Sbjct 2010332 GTCGTCGTCGCCGCCCCCGTCGCCGCTCCCCGCGGGTACGACACGTAGAACTGCGCGAAC 2010273
Query 21129 ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACG 21188
| ||| || || || || |||||| | |||||||| ||||||||||||| || |||
Sbjct 2010272 ATGTGGCACGGCGGCAGCGCCATCTTGCCCAGGTCCGCCGGGTTCCACGCGCTCAGCACG 2010213
Query 21189 ATGCGCCGATCGTG-GGGC-CGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCA 21246
|||||||| |||| |||| || | | || | |||||| | ||||||||| |
Sbjct 2010212 ATGCGCCGGTCGTACGGGCTCGTCCGCAGCTTG--TGCACCACCTCGGCCAGCTGGTCGA 2010155
Query 21247 CCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACT 21306
| ||||| ||| |||||| || | || || |||| ||||||| || || | |||||
Sbjct 2010154 CGCCCTGGCCCGCGTAGTCGGTCGCCGCGTCCACGTACGCCGCCCCGAAGTGCCGCCACT 2010095
Query 21307 GGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG-CC 21365
|||||||||||||||| ||||| || ||| | |||| || ||||| ||| | ||
Sbjct 2010094 GGAACCCGTACACCGGGCCCAGGTCCCCCACCGCCCGGTGGCC-CAGCCCCACGCTGTCC 2010036
Query 21366 AAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTG 21425
| || |||| ||||||| ||||||| || || || ||| | | || | | ||
Sbjct 2010035 AGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACCCCG-GCCTCG-CTGAGCGCCA 2009978
Query 21426 GAGTCG--GTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483
| | || ||| |||| | |||||||||| |||| |||| || ||| | ||||
Sbjct 2009977 GCGACGACGTGTTGCCCGCCACGAACCACAGCAGCTCCGCCACCACCGCCCGCAGGAACA 2009918
Query 21484 CCCTTTTGGTGGTTAACAGAGG 21505
||| |||||||| | ||| ||
Sbjct 2009917 CCCGCTTGGTGGTCAGCAGCGG 2009896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427775838380880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |