Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 226 4e-54 >seq2 Length=5746313 Score = 226 bits (250), Expect = 4e-54 Identities = 750/1146 (65%), Gaps = 24/1146 (2%) Strand=Plus/Minus Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||| |||| ||| || ||||| ||||||| || | | |||| || || || ||||| Sbjct 596966 AGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCA 596907 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCAT 71821 |||||| | |||||| || | || | ||| |||||||| ||| || | | Sbjct 596906 GAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-T 596848 Query 71822 CCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 71881 |||| || || || || || ||||||| || |||| | || | ||| || | ||||| Sbjct 596847 CCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA 596788 Query 71882 CGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT--TCGTA-TTGT-GTATA 71936 | || | ||||| || | || | | | ||| ||| ||||| || | ||| | Sbjct 596787 -GCTTCTGGGCCTTGATCTT-TTGTCG-ACCTCGGCCCTCGGCCTCGTACTTCTCGTAGA 596731 Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACAT 71996 | |||||||| || || || ||| | | | ||||| || ||||| || ||||| Sbjct 596730 GGGCC--TCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACAT 596673 Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 | | ||||||||| | | | || |||||||| |||||||| |||||||| || || Sbjct 596672 AAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGC 596613 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 | || ||||| | | | ||| || || || |||||| ||||| ||||| Sbjct 596612 AAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAA 596553 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | | ||| || ||||| || || | || || || | | || || || ||||| Sbjct 596552 CTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTT 596493 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 || || || || | ||||| ||| ||||| || | || | | ||| |||| |||||| Sbjct 596492 GCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACC 596433 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||||| ||| ||||| |||| |||||| || | ||||||||| | || Sbjct 596432 ATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTT 596373 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 ||||| || || || ||||| || ||||| | ||||| || | || ||||| || Sbjct 596372 GAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAAT 596313 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 || || || || |||||| |||||| | || || || |||| | ||| | || Sbjct 596312 ACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACA---GCTGA-GCCT 596257 Query 72417 ----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 72472 || || || || || | |||||||| ||||| || || | || |||| | Sbjct 596256 GGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGA 596197 Query 72473 GATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCA 72532 | ||||| ||||||||| | || || || | || || || || ||||||| Sbjct 596196 GGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACGCA 596137 Query 72533 TTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTT 72592 | | ||||||||| ||||| || || |||||| ||| | |||| | || ||| | Sbjct 596136 TGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCGCT 596077 Query 72593 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 72652 ||||||| || || || || || | ||| ||||| || ||||| | ||| | || | Sbjct 596076 CCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCGGAGT 596017 Query 72653 TGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAGAA 72711 ||| | ||||| | | | | || | ||| | | || | ||| || || || Sbjct 596016 CGAGGTCCTCCTTGTGTCTCATGAC-GCAGTCATAGGTTTCCTGGGCAATCATGGGTGAT 595958 Query 72712 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAG 72770 || | || || ||||| |||||||||| | | | | | | || || | || | Sbjct 595957 GGTGTGCCGTTCTTAGGGTTAACATAGTGGTACAGGT-CGCTGACAACCGACGACCATTG 595899 Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 || || || | |||||| || || || ||||| || | ||| || || ||||| || || Sbjct 595898 CTTCTTCGTCTGCTTGTGGAGGTTGGACACGGCAATGCGGGCAGCCAGGATGGCGTAGTC 595839 Query 72831 TGGATG 72836 ||| || Sbjct 595838 TGGGTG 595833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138939933560