Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2 226 4e-54
>seq2
Length=5746313
Score = 226 bits (250), Expect = 4e-54
Identities = 750/1146 (65%), Gaps = 24/1146 (2%)
Strand=Plus/Minus
Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762
||| |||| ||| || ||||| ||||||| || | | |||| || || || |||||
Sbjct 596966 AGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCA 596907
Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCAT 71821
|||||| | |||||| || | || | ||| |||||||| ||| || | |
Sbjct 596906 GAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-T 596848
Query 71822 CCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 71881
|||| || || || || || ||||||| || |||| | || | ||| || | |||||
Sbjct 596847 CCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA 596788
Query 71882 CGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT--TCGTA-TTGT-GTATA 71936
| || | ||||| || | || | | | ||| ||| ||||| || | ||| |
Sbjct 596787 -GCTTCTGGGCCTTGATCTT-TTGTCG-ACCTCGGCCCTCGGCCTCGTACTTCTCGTAGA 596731
Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACAT 71996
| |||||||| || || || ||| | | | ||||| || ||||| || |||||
Sbjct 596730 GGGCC--TCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACAT 596673
Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056
| | ||||||||| | | | || |||||||| |||||||| |||||||| || ||
Sbjct 596672 AAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGC 596613
Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116
| || ||||| | | | ||| || || || |||||| ||||| |||||
Sbjct 596612 AAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAA 596553
Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176
| | | | ||| || ||||| || || | || || || | | || || || |||||
Sbjct 596552 CTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTT 596493
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
|| || || || | ||||| ||| ||||| || | || | | ||| |||| ||||||
Sbjct 596492 GCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACC 596433
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
|||||||| ||| ||||| |||| |||||| || | ||||||||| | ||
Sbjct 596432 ATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTT 596373
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
||||| || || || ||||| || ||||| | ||||| || | || ||||| ||
Sbjct 596372 GAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAAT 596313
Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416
|| || || || |||||| |||||| | || || || |||| | ||| | ||
Sbjct 596312 ACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACA---GCTGA-GCCT 596257
Query 72417 ----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 72472
|| || || || || | |||||||| ||||| || || | || |||| |
Sbjct 596256 GGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGA 596197
Query 72473 GATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCA 72532
| ||||| ||||||||| | || || || | || || || || |||||||
Sbjct 596196 GGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACGCA 596137
Query 72533 TTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTT 72592
| | ||||||||| ||||| || || |||||| ||| | |||| | || ||| |
Sbjct 596136 TGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCGCT 596077
Query 72593 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 72652
||||||| || || || || || | ||| ||||| || ||||| | ||| | || |
Sbjct 596076 CCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCGGAGT 596017
Query 72653 TGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAGAA 72711
||| | ||||| | | | | || | ||| | | || | ||| || || ||
Sbjct 596016 CGAGGTCCTCCTTGTGTCTCATGAC-GCAGTCATAGGTTTCCTGGGCAATCATGGGTGAT 595958
Query 72712 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAG 72770
|| | || || ||||| |||||||||| | | | | | | || || | || |
Sbjct 595957 GGTGTGCCGTTCTTAGGGTTAACATAGTGGTACAGGT-CGCTGACAACCGACGACCATTG 595899
Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830
|| || || | |||||| || || || ||||| || | ||| || || ||||| || ||
Sbjct 595898 CTTCTTCGTCTGCTTGTGGAGGTTGGACACGGCAATGCGGGCAGCCAGGATGGCGTAGTC 595839
Query 72831 TGGATG 72836
||| ||
Sbjct 595838 TGGGTG 595833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138939933560
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