Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 2e-26
>seq2
Length=5746313
Score = 134 bits (148), Expect = 2e-26
Identities = 202/287 (70%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| |||||| | || || || ||||| | ||||||| | || |||
Sbjct 3730793 ATCTGGCAGATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTG 3730852
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||||||| |||| ||| | | | | | || |||| | | || || ||
Sbjct 3730853 TCCAAGGACCTGCACGACTGGAACAACAGAATCAACGAGGATGAGAAATACTTCATCTCC 3730912
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||||| | ||||||||||||| || || || ||||||||||| || || | |||
Sbjct 3730913 CACATCCTTGCCTTCTTTGCCGCGTCAGACGGCATCGTCAACGAGAACTTGGTCGAGCGA 3730972
Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258
||| ||| | ||||| |||| | ||||| ||||| ||||| ||||||||
Sbjct 3730973 TTCAGCGGCGAGGTCCAGATTCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGATG 3731032
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
|||||| | ||||| || | ||||| || ||||||| |||||
Sbjct 3731033 GAGAACATACACTCCGAGACCTACTCCCTGCTCATTGACACCTACAT 3731079
Score = 132 bits (146), Expect = 7e-26
Identities = 291/431 (68%), Gaps = 15/431 (3%)
Strand=Plus/Plus
Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487
|||| || ||||| || || ||||| |||||||| ||| || || ||||||| |
Sbjct 3731252 TGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCT 3731311
Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547
||||||||||||| || || ||||| || ||||| | |||||||| || || || |
Sbjct 3731312 GGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGTTGATCTCGCGTG 3731371
Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607
|||||||||||||| ||||||||| || ||||| | | | ||| ||
Sbjct 3731372 ACGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTT---CTCCCACCTG------AAGA 3731422
Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667
| ||||| | || |||||| || || | || ||||| || || || ||||
Sbjct 3731423 ATCGCCCCAGCAAGGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATTGAGCAAG 3731482
Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
|||| | || || |||| || | | || | || ||||||| ||| || |||
Sbjct 3731483 AGTTCTTGACAGAGGCCCTCCCTTGCGCCCTGCTGGGAATGAACTCCAACCTCATGAAGC 3731542
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784
| ||||| |||||||| || || ||||| | | | | | | ||| || ||| | |
Sbjct 3731543 AATACATTGAGTTTGTTGCGGACCGTCTCC--TCCTTGCT-CTCGGCAACGAGAAGGTGT 3731599
Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844
|| ||||| || ||||| || |||||| | ||| || || | || ||||||||||
Sbjct 3731600 ACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGAGGCAAGACCAACT 3731659
Query 125845 TTTTCGAGAAG 125855
| || ||||||
Sbjct 3731660 TCTTTGAGAAG 3731670
Score = 107 bits (118), Expect = 3e-18
Identities = 344/525 (66%), Gaps = 14/525 (3%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|||||||| || || ||||| || || || || || | || |||| | || ||
Sbjct 596472 CGATACGTCGACCAAGGTGGCAACAAGCGACCTGGTGCCTTTGCTATCTATCTCGAGCCC 596531
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||| | || || ||||| || | || | || || ||| ||| |||||||
Sbjct 596532 TGGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAAGAGGTC 596591
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040
|| || | || | || ||| |||||| | || ||| | |||||||| || ||
Sbjct 596592 CGCGCTCGCGATCTTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTGTTGAG 596651
Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100
|| |||| | | |||| || ||||||||| | || || || ||| |||||
Sbjct 596652 AAGAACGGAG---AGTGGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATGTT 596708
Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATA-CGTGAG 97159
| ||||| ||||| |||||| ||| | |||||| ||||||||| || |
Sbjct 596709 TACGGCGATGAGTTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAGGTCGACAA 596768
Query 97160 ACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218
| || || | || | |||| || ||| | || || || ||| ||| |||||||| |
Sbjct 596769 AAGA-TCAAGGCCC-AGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACTGGTA 596826
Query 97219 CTCCGTACATTCTCTACAAGGATACCGTG--AATCGCAACAGCAACCAACGCCACTTGGG 97276
|| | ||| |||||||||| ||| || || ||||| || |||||| || ||||
Sbjct 596827 ACCCTTTCATGCTCTACAAGG--ACCATGCCAACCGCAAGAGTAACCAAAAGAACCTGGG 596884
Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGAC 97336
||||||| |||| ||||| ||||| || || | || ||| | | || || |||
Sbjct 596885 CACCATCCGCAGCTCTAATCTCTGCACCGAGATCATTGAATACTCGGCACCTGATGAGGT 596944
Query 97337 GGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381
|| || ||| | |||| || | ||||||| ||| || ||
Sbjct 596945 CGCCGTCTGCAATTTGGCCTCTCTGGCTCTGCCCTCGTTCGTCGA 596989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058912839560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |