Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 >seq2 Length=5746313 Score = 134 bits (148), Expect = 2e-26 Identities = 202/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| | || || || ||||| | ||||||| | || ||| Sbjct 3730793 ATCTGGCAGATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTG 3730852 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||||||| |||| ||| | | | | | || |||| | | || || || Sbjct 3730853 TCCAAGGACCTGCACGACTGGAACAACAGAATCAACGAGGATGAGAAATACTTCATCTCC 3730912 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| | ||||||||||||| || || || ||||||||||| || || | ||| Sbjct 3730913 CACATCCTTGCCTTCTTTGCCGCGTCAGACGGCATCGTCAACGAGAACTTGGTCGAGCGA 3730972 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | ||||| |||| | ||||| ||||| ||||| |||||||| Sbjct 3730973 TTCAGCGGCGAGGTCCAGATTCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGATG 3731032 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||||| | ||||| || | ||||| || ||||||| ||||| Sbjct 3731033 GAGAACATACACTCCGAGACCTACTCCCTGCTCATTGACACCTACAT 3731079 Score = 132 bits (146), Expect = 7e-26 Identities = 291/431 (68%), Gaps = 15/431 (3%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| || ||||| || || ||||| |||||||| ||| || || ||||||| | Sbjct 3731252 TGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCT 3731311 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 ||||||||||||| || || ||||| || ||||| | |||||||| || || || | Sbjct 3731312 GGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACCTTCTCCAACGAGTTGATCTCGCGTG 3731371 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607 |||||||||||||| ||||||||| || ||||| | | | ||| || Sbjct 3731372 ACGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTT---CTCCCACCTG------AAGA 3731422 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | ||||| | || |||||| || || | || ||||| || || || |||| Sbjct 3731423 ATCGCCCCAGCAAGGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATTGAGCAAG 3731482 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| | || || |||| || | | || | || ||||||| ||| || ||| Sbjct 3731483 AGTTCTTGACAGAGGCCCTCCCTTGCGCCCTGCTGGGAATGAACTCCAACCTCATGAAGC 3731542 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 | ||||| |||||||| || || ||||| | | | | | | ||| || ||| | | Sbjct 3731543 AATACATTGAGTTTGTTGCGGACCGTCTCC--TCCTTGCT-CTCGGCAACGAGAAGGTGT 3731599 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 || ||||| || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 3731600 ACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGAGGCAAGACCAACT 3731659 Query 125845 TTTTCGAGAAG 125855 | || |||||| Sbjct 3731660 TCTTTGAGAAG 3731670 Score = 107 bits (118), Expect = 3e-18 Identities = 344/525 (66%), Gaps = 14/525 (3%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 |||||||| || || ||||| || || || || || | || |||| | || || Sbjct 596472 CGATACGTCGACCAAGGTGGCAACAAGCGACCTGGTGCCTTTGCTATCTATCTCGAGCCC 596531 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||| | || || ||||| || | || | || || ||| ||| ||||||| Sbjct 596532 TGGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCATGGTAAAGAAGAGGTC 596591 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040 || || | || | || ||| |||||| | || ||| | |||||||| || || Sbjct 596592 CGCGCTCGCGATCTTTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAACGTGTTGAG 596651 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 || |||| | | |||| || ||||||||| | || || || ||| ||||| Sbjct 596652 AAGAACGGAG---AGTGGACGCTTATGTGCCCCAATGAGTGCCCTGGCCTGGCCGATGTT 596708 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATA-CGTGAG 97159 | ||||| ||||| |||||| ||| | |||||| ||||||||| || | Sbjct 596709 TACGGCGATGAGTTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGGGCCGAGGTCGACAA 596768 Query 97160 ACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218 | || || | || | |||| || ||| | || || || ||| ||| |||||||| | Sbjct 596769 AAGA-TCAAGGCCC-AGAAGCTCTGGTATGCTATTCTGGAGGCCCAGACCGAGACTGGTA 596826 Query 97219 CTCCGTACATTCTCTACAAGGATACCGTG--AATCGCAACAGCAACCAACGCCACTTGGG 97276 || | ||| |||||||||| ||| || || ||||| || |||||| || |||| Sbjct 596827 ACCCTTTCATGCTCTACAAGG--ACCATGCCAACCGCAAGAGTAACCAAAAGAACCTGGG 596884 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGAC 97336 ||||||| |||| ||||| ||||| || || | || ||| | | || || ||| Sbjct 596885 CACCATCCGCAGCTCTAATCTCTGCACCGAGATCATTGAATACTCGGCACCTGATGAGGT 596944 Query 97337 GGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || || ||| | |||| || | ||||||| ||| || || Sbjct 596945 CGCCGTCTGCAATTTGGCCTCTCTGGCTCTGCCCTCGTTCGTCGA 596989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058912839560