Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4 109 4e-19 >seq4 Length=3212107 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || ||| | ||| | ||| || ||||| || |||||||| || || Sbjct 2383653 CCACCACGCAGACGTAGAACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTC 2383594 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | || || || || ||||| || | ||||| ||||||||||| ||| Sbjct 2383593 AGAGTTCGGCCATCCTCCAACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGA 2383534 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 || || || ||||| ||| |||||||| || | || || ||||| | || || || Sbjct 2383533 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCAATAGTATC-CGATGACTCAAC 2383475 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||| || || |||| ||| || ||||| ||||||||| Sbjct 2383474 CTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATA 2383426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179063164171