Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq8 91.5 1e-13
seq4 82.4 6e-11
>seq8
Length=2477967
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| || ||||||||||| || |||||||| || | | || ||||||| ||||||
Sbjct 2273350 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGC 2273291
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| || | || || ||||| || || ||| | | |||||||||| || ||
Sbjct 2273290 TTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTG 2273231
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | ||||| |||| ||||||| ||| | || || || || || |||
Sbjct 2273230 GACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 2273171
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| || || || || ||||||||
Sbjct 2273170 AGGGTCTTGACGAAGATCTGCAT 2273148
>seq4
Length=3212107
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/208 (69%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| || ||||||||||| || |||||||| || | | || ||||||| || |||
Sbjct 2383108 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCAAGTTGC 2383049
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| | | || |||||||| || || ||| | | ||||||||| || ||
Sbjct 2383048 TTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTG 2382989
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||| | | | || || || |||| ||||| ||||| || ||||| || ||||
Sbjct 2382988 GACTTCACGTTGTCG--ATAGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGG 2382931
Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGT 48729
|||| || ||||| || |||||||| ||
Sbjct 2382930 TGAGGGTCTTCACGAAGATCTGCATGGT 2382903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251040846031
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |