Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4 125 6e-24 >seq4 Length=3212107 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| ||||| || || || | ||| || || |||| ||| | ||||||| Sbjct 2383635 ACCAGATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCACTCAGAGTTCGGCCATCCTCC 2383576 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || ||| ||||||| |||| ||| || || ||||||||||| || ||||| | | Sbjct 2383575 AACTGCTTGCCGGCAAAGATCAATCGTTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGA 2383516 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||| | | | ||| || | || || |||| ||||||||| ||| Sbjct 2383515 ATCTTGCTCTTGACGTTGTCAATAGTATCCGATGACTCAACCTCAAGCGTGATGGTCTTT 2383456 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||| || |||||||| ||||| Sbjct 2383455 CCGGTCAAAGTCTTGACAAAGATTTGCAT 2383427 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | || |||||||| || | ||| || ||||||| || | ||||||| Sbjct 2383863 ACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGCCATCCTCC 2383804 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || || ||||||| | | || ||||| || ||||||||||| ||||| | Sbjct 2383803 AACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCCTGG 2383744 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||| | | | ||| || | || || || | ||||| || ||| Sbjct 2383743 ATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTCTTT 2383684 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || || || ||||||||||| Sbjct 2383683 CCCGTCAATGTCTTGACGAAGATCTGCAT 2383655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || || || ||| ||||||| || | || || || || || || || || ||| Sbjct 2383060 TCCTCAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGGATGCCCTCCTTG 2383001 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||| ||| | ||| |||||| | | ||||| || | |||||| Sbjct 2383000 TCCTGGATCTTGGACTTCACGTTGTCGATAGTGTCGGAGGACTCGACCTCGAGAGTGATG 2382941 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || ||||| |||||||||||| || Sbjct 2382940 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGGTT 2382902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291026287160