Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 4e-18
>seq2
Length=5746313
Score = 104 bits (114), Expect = 4e-18
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || || | ||| |||||| || |||||||| || ||||||||||| |||||
Sbjct 4104621 GCCAAGCGCCACCGAAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 4104563
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| || ||||||||||| ||||||||| ||||||
Sbjct 4104562 CCGACGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCTG 4104522
Score = 95.1 bits (104), Expect = 2e-15
Identities = 82/99 (83%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || || | ||| |||||| || |||||||| || ||||||||||| |||||
Sbjct 31990 GCCAAGCGCCACCGAAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 31932
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
|| ||||| || ||||||||||| ||||||||| ||||
Sbjct 31931 TCGACGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTC 31893
Score = 89.7 bits (98), Expect = 8e-14
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 16527 TCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTA 16586
|| ||| | || |||| || |||| |||| ||| | ||| ||||||| || || |
Sbjct 31818 TCCCTGCAGTGATCTACGAGGAGACCCGTGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCA 31759
Query 16587 TCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATA 16646
||| ||| || || ||| ||||||||||| || || ||||| |||||||| | ||
Sbjct 31758 TCCGTGACGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACG 31699
Query 16647 TCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
||||||| || |||| || |||||||| | | || ||||| || ||||
Sbjct 31698 TCGTCTACGCCCTGAAGCGACAAGGCCGCACCCTGTACGGTTTCGGTGGTTA 31647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075171656483
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |