Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq2 235 7e-57
>seq2
Length=5746313
Score = 235 bits (260), Expect = 7e-57
Identities = 774/1183 (65%), Gaps = 30/1183 (3%)
Strand=Plus/Minus
Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956
||| |||| ||| || ||||| ||||||| || ||| |||| || ||||| |||||
Sbjct 596966 AGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCA 596907
Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCAT 63015
|||||| | ||| || || | || | ||| |||||||| ||| || | |
Sbjct 596906 GAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-T 596848
Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075
|||| || || ||||| || ||||||| || |||| | || | ||| || | |||||
Sbjct 596847 CCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA 596788
Query 63076 CGACTC-GAGCCTTTATTATAGATTTGT--ATCTCCTTTCTCTT--TCGTA--TAGTGTA 63128
| || | ||||| || | |||| | ||| ||| ||||| | |||
Sbjct 596787 -GCTTCTGGGCCTTGATCTT----TTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTA 596733
Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188
| | |||||||| || || |||||| | ||| ||||| || |||| || |||
Sbjct 596732 GAGGGCC--TCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCAC 596675
Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248
|| | || ||||||||||| | || || |||||||| |||||||| |||||||| ||
Sbjct 596674 ATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGG 596615
Query 63249 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63308
|| | || ||||| | | | || || || || |||||| ||||| |||
Sbjct 596614 GCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGG 596555
Query 63309 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63368
||| | | | ||| || ||||| || || | || || || | | ||||| || |||
Sbjct 596554 AACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTG 596495
Query 63369 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63428
|| || || || || | ||||| ||| ||||| || | || | | ||| |||| ||||
Sbjct 596494 TTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATA 596435
Query 63429 CCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 63488
|| || ||| |||| |||||||||| |||||| || | ||||||||| ||
Sbjct 596434 CCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATG 596375
Query 63489 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63548
||||| || || || ||||| || ||||| | ||||| || | ||||||||
Sbjct 596374 TTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAA 596315
Query 63549 ATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63608
||||| || ||||| ||||| |||||| | || || || |||| | ||| |
Sbjct 596314 ATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACA---GCTGA-GC 596259
Query 63609 CT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664
|| || || || || || | |||||||| ||||| || || | || || |
Sbjct 596258 CTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACAT 596199
Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63724
|| ||||| ||||||||| | || || || | || || || || |||||
Sbjct 596198 GAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACG 596139
Query 63725 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63784
||| | ||| ||||| ||||| || || |||||| || | |||| | || |||
Sbjct 596138 CATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCG 596079
Query 63785 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63844
|||||||| || || || || || | ||| ||||| || ||||| | ||| | ||
Sbjct 596078 CTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCGGA 596019
Query 63845 GTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAG 63903
|| ||| | ||||| | | | | || | ||| | | || | ||| || || |
Sbjct 596018 GTCGAGGTCCTCCTTGTGTCTCATGAC-GCAGTCATAGGTTTCCTGGGCAATCATGGGTG 595960
Query 63904 AATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AAT 63962
| || | || || ||||| |||||||||| | | | | | | || || | ||
Sbjct 595959 ATGGTGTGCCGTTCTTAGGGTTAACATAGTGGTACAGGT-CGCTGACAACCGACGACCAT 595901
Query 63963 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAA 64022
| || || || | |||||| || || || ||||| || | ||| || || ||||| ||
Sbjct 595900 TGCTTCTTCGTCTGCTTGTGGAGGTTGGACACGGCAATGCGGGCAGCCAGGATGGCGTAG 595841
Query 64023 TCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064
|| || || ||| | || || ||| ||| | ||||| |||
Sbjct 595840 TCTGGGTG-GGTGACGGTCATGTAGGCGGCTGTCTCGGCAGCC 595799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622946958607960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |