Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 235 7e-57 >seq2 Length=5746313 Score = 235 bits (260), Expect = 7e-57 Identities = 774/1183 (65%), Gaps = 30/1183 (3%) Strand=Plus/Minus Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 ||| |||| ||| || ||||| ||||||| || ||| |||| || ||||| ||||| Sbjct 596966 AGAGGCCAAATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCA 596907 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCAT 63015 |||||| | ||| || || | || | ||| |||||||| ||| || | | Sbjct 596906 GAGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-T 596848 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 |||| || || ||||| || ||||||| || |||| | || | ||| || | ||||| Sbjct 596847 CCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA 596788 Query 63076 CGACTC-GAGCCTTTATTATAGATTTGT--ATCTCCTTTCTCTT--TCGTA--TAGTGTA 63128 | || | ||||| || | |||| | ||| ||| ||||| | ||| Sbjct 596787 -GCTTCTGGGCCTTGATCTT----TTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTA 596733 Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188 | | |||||||| || || |||||| | ||| ||||| || |||| || ||| Sbjct 596732 GAGGGCC--TCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCAC 596675 Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248 || | || ||||||||||| | || || |||||||| |||||||| |||||||| || Sbjct 596674 ATAAGCGTCCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGG 596615 Query 63249 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63308 || | || ||||| | | | || || || || |||||| ||||| ||| Sbjct 596614 GCAAGGAAAAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGG 596555 Query 63309 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63368 ||| | | | ||| || ||||| || || | || || || | | ||||| || ||| Sbjct 596554 AACTCAAAGACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTG 596495 Query 63369 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63428 || || || || || | ||||| ||| ||||| || | || | | ||| |||| |||| Sbjct 596494 TTGCCACCTTGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATA 596435 Query 63429 CCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 63488 || || ||| |||| |||||||||| |||||| || | ||||||||| || Sbjct 596434 CCATTGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATG 596375 Query 63489 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63548 ||||| || || || ||||| || ||||| | ||||| || | |||||||| Sbjct 596374 TTGAGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAA 596315 Query 63549 ATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63608 ||||| || ||||| ||||| |||||| | || || || |||| | ||| | Sbjct 596314 ATACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACA---GCTGA-GC 596259 Query 63609 CT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664 || || || || || || | |||||||| ||||| || || | || || | Sbjct 596258 CTGGGGCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACAT 596199 Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63724 || ||||| ||||||||| | || || || | || || || || ||||| Sbjct 596198 GAGGTTGTAAGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACG 596139 Query 63725 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63784 ||| | ||| ||||| ||||| || || |||||| || | |||| | || ||| Sbjct 596138 CATGATCATATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCG 596079 Query 63785 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63844 |||||||| || || || || || | ||| ||||| || ||||| | ||| | || Sbjct 596078 CTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCGGA 596019 Query 63845 GTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAG 63903 || ||| | ||||| | | | | || | ||| | | || | ||| || || | Sbjct 596018 GTCGAGGTCCTCCTTGTGTCTCATGAC-GCAGTCATAGGTTTCCTGGGCAATCATGGGTG 595960 Query 63904 AATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AAT 63962 | || | || || ||||| |||||||||| | | | | | | || || | || Sbjct 595959 ATGGTGTGCCGTTCTTAGGGTTAACATAGTGGTACAGGT-CGCTGACAACCGACGACCAT 595901 Query 63963 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAA 64022 | || || || | |||||| || || || ||||| || | ||| || || ||||| || Sbjct 595900 TGCTTCTTCGTCTGCTTGTGGAGGTTGGACACGGCAATGCGGGCAGCCAGGATGGCGTAG 595841 Query 64023 TCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064 || || || ||| | || || ||| ||| | ||||| ||| Sbjct 595840 TCTGGGTG-GGTGACGGTCATGTAGGCGGCTGTCTCGGCAGCC 595799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946958607960