Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 347 3e-90 >seq2 Length=5746313 Score = 347 bits (384), Expect = 3e-90 Identities = 1142/1747 (65%), Gaps = 40/1747 (2%) Strand=Plus/Plus Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 ||||| | ||||| || | || ||||||||| | |||||||||||| |||||||| Sbjct 596100 AATGGCAAGATTGTGGAGAGACCACAGCATATGATCATGCGTGTTGCTGTTGGTATCTGG 596159 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCA 363550 | || | || | ||||| || || || || | || | | ||| |||| Sbjct 596160 GGAGACGACATCGAGAGGGTTATTGAGACTTACAACCTCAT--GTCCAGCAAGTACTTCA 596217 Query 363551 CGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCT 363610 | |||||| | || || ||| ||| ||||| || | | | ||| |||| ||||||| Sbjct 596218 CACACGCCTCTCCTACTCTGTTCAACGCTGGTACGCCCCAGGCTCAGCTGTCATCTTGCT 596277 Query 363611 TTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTG 363670 | ||| | | |||||||| || ||| || ||||| | |||||| || |||| ||| | Sbjct 596278 TCCTTGTCGACATGAAGGATGACAGCATTGATGGTATTTATGACACCCTCAAGACTTGCG 596337 Query 363671 CTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAG 363729 | | || ||||||| || || || || ||| | |||||| | ||||||| || | Sbjct 596338 CCATGATCTCCAAGATGGCCGGTGGTATCGGTCTCAACATCCACCGTATTCGTGCGACCG 596397 Query 363730 AACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 | ||| || ||| || || ||| || ||||| | |||||||||||||| || Sbjct 596398 G-CTCTTATATCGCCGGTACCAACGG-TACATCCAATGGTATTGTTCCCATGCTTCGCGT 596455 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 ||| |||| ||||| | ||||||||||| ||||| ||||| || || ||||| Sbjct 596456 GTTCAACAACACTGCTCGATACGTCGACCAAGGTGGCAACAAGCGACCTGGTGCCTTTGC 596515 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908 ||| ||||||||||| || ||||| | |||||||| || || ||||| || ||| Sbjct 596516 TATCTATCTCGAGCCCTGGCACTCCGATGTCTTTGAGTTCCTGGATCTCCGAAAGAACCA 596575 Query 363909 GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTT 363968 || ||||| || | || || || ||||| ||| ||| || ||| || | || | || Sbjct 596576 TGGTAAAGAAGAGGTCCGCGCTCGCGATCTTTTCCTTGCCCTCTGGATTCCCGATCTCTT 596635 Query 363969 TATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAG 364027 ||||| || || || | || || | ||| | || | ||||| | || || || | Sbjct 596636 CATGAAACGTGTTGA-GAAGAACGGAGAGTGGACGCTTATGTGCCCCAATGAGTGCCCTG 596694 Query 364028 GTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGG 364087 | || ||||||| | || || || | | || || ||||| ||||| || | |||| Sbjct 596695 GCCTGGCCGATGTTTACGGCGATGAGTTCGAGGCCCTCTACGAGAAGTACGAGGCCGAGG 596754 Query 364088 GAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGA 364147 | | ||| | | || || |||||||| |||| ||| || |||| | |||| Sbjct 596755 GCCGAGGTCGACAAAAGATCAAGGCCCAGAAGCTCTGGTATGCTATTCTGGAGGCCCAGA 596814 Query 364148 TTGAGACAGGAACACCCTAT-ATGTTGTACAAAGATTCGTG-CAACCGCAAGTCCAACCA 364205 ||||| || | ||||| | ||| | ||||| || | || |||||||||| ||||| Sbjct 596815 CCGAGACTGGTA-ACCCTTTCATGCTCTACAAGGA-CCATGCCAACCGCAAGAGTAACCA 596872 Query 364206 GCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCG 364264 || |||| || || | || |||| | || || || |||||||| ||||||||| | | Sbjct 596873 AAAGAACCTGGGCACCA-TCCGCAGCTCTAATCTCTGCACCGAGATCATTGAATACTCGG 596931 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT----- 364319 | || || ||| ||||| || || | || || | || || || |||| || Sbjct 596932 CACCTGATGAGGTCGCCGTCTGCAATTTGGCCTCTCTGGCTCTGCCCTCGTTCGTCGACT 596991 Query 364320 -AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCA 364378 || | || | |||| ||| | || | ||||| || | || | ||| Sbjct 596992 ACAACCAGGGCGTCTATGACTTTCAGAAGCTGCACGACGTCACGCAGACTGTTGTGCGCA 597051 Query 364379 ATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTC 364433 | || ||||| | || || || || || || ||| || || || ||| Sbjct 597052 ACCTGAACAAGATCATTGATGTCAACTACTACCCTGTTCAAGAGGCGCGCAACAGC---- 597107 Query 364434 TAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGAT 364493 || ||||| || || || || || || ||||| || || || ||||| | |||| | Sbjct 597108 -AACATGCGACACCGTCCCATCGGCCTCGGTGTCCAAGGTCTTGCTGATGCTTTTCTAGC 597166 Query 364494 GCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAAC 364553 ||| ||| | || || || || || ||| | || || ||| ||||||| || || Sbjct 597167 CCTCCGCATGCCTTTCGAGTCTCCCGAGGCTAGGCAGCTCAACAAGCAGATCTTCGAGAC 597226 Query 364554 AATGTATTTTGCCGCAATGACTGCTT-CGTGTGATTTGGCAAAAACCAAGGGAAAGTACT 364612 || || || || |||| |||| | || | | ||| | ||| ||| |||| Sbjct 597227 CATTTACCATGGTGCCTTGACAGCTTCCATGGAGATCGCCAAGGAGCAA-GGACCCTACT 597285 Query 364613 CTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA 364672 | || || ||||| || ||| | || ||||| | | || | || | ||||| |||| Sbjct 597286 CCACCTACGAGGGCTCACCTGTCTCCCAGGGTATCCTACAATACGACATGTGGAACGTCA 597345 Query 364673 CGCCATCTGTCCGATGGAACTGGGATA--CGCTACGTTCCAACGTTAAGAAGCATGGTAC 364730 | ||||||| || ||| ||||||| | | | | | | | | ||| || ||||| Sbjct 597346 CCCCATCTGACCTTTGGGACTGGGAGAGCCTCAAAGAGC--AGATCAAGCAGAATGGTGT 597403 Query 364731 TCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790 |||||| || | | || || |||||||| || ||| | |||||||| || || Sbjct 597404 CCGCAACAGTCTGTTGATGGCTCCTATGCCCACTGCCAGTACATCTCAGATCCTGGGCAA 597463 Query 364791 CAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGA 364850 ||||||||| ||||| || | |||| ||| | || || || || || || | || || Sbjct 597464 CAACGAGTGTTTCGAGCCCTATACATCCAACATCTACTCTCGTCGTGTCCTAGCTGGCGA 597523 Query 364851 ATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA 364910 || | ||| || || | || | ||||| || |||| || |||||| || Sbjct 597524 GTTCCAGGTGGTCAACCCCTGGCTGCTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGA 597583 Query 364911 CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC 364970 || ||||||||| |||||| || | |||||| | ||||||||||| |||| Sbjct 597584 CAACATGAAGAATCGTATCATTGCTGAGGGTGGTTCCATCCAGAACATTCCCAACATTCC 597643 Query 364971 AGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGA 365030 | || | ||| | | ||||| ||||| ||||| || || |||||| | | | Sbjct 597644 GGCGGAGATCAAGGCCCTGTACAAGACCGTGTGGGAGATCTCTCAGCGAACCGTTGTGCA 597703 Query 365031 TATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGAC 365090 ||||| ||||| || ||||| || ||| || |||||| || ||| | |||| Sbjct 597704 GATGGCTGCCGACCGTGGTGCCTTCATCGACCAATCCCAGTCTTTGAACATCCACATGCG 597763 Query 365091 TCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG-TGGAAATCCGGTCTTA 365149 | || ||| | |||| | || |||||| ||| ||||| ||||| || || | Sbjct 597764 GGACCCCACCATGGGCAAGATCACGAGCATGCACTTC-ACGGGCTGGAAGCTAGGCCTGA 597822 Query 365150 AGACAGG 365156 |||| || Sbjct 597823 AGACGGG 597829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353082324242