Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq2 163 3e-35
seq8 120 3e-22
seq4 113 4e-20
seq3 84.2 2e-11
>seq2
Length=5746313
Score = 163 bits (180), Expect = 3e-35
Identities = 923/1447 (64%), Gaps = 47/1447 (3%)
Strand=Plus/Minus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| ||||| |||||||| || | |||||||| | || | ||| || || ||||
Sbjct 597538 TTGACCACCTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGC 597479
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| ||| ||||||| ||||||||||| |||| || | || |||||||| |||| |
Sbjct 597478 TCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATC 597419
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
|| | ||||| | || | || |||||| | || || || | |||| |||||
Sbjct 597418 AACAGACTGTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGCTCTCCCAGTCCCAA 597359
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| || || | |||| |||||||||||| || | || |||| | | | || |
Sbjct 597358 AGGTCAGATGGGGTGACGTTCCACATGTCGTATTGTAGGATACCCTGGGAGACAGGTGAG 597299
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTC---GCAACTCGCCTCCA 145352
|| | ||| ||| | || | | ||||||| ||| | || || ||
Sbjct 597298 CCCTCGTAGGTGGAGTA--GGGTCCTTGCTCCTTGGCGATCTCCATGGAA---GCTGTCA 597244
Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412
|| || ||||| |||||| || ||| |||||||| || | || || ||
Sbjct 597243 AGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGAGACT 597184
Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472
|| | |||||||| || || ||||||||| || || || || | || | ||||||||
Sbjct 597183 CGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGATGG 597124
Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCGATA 145531
| || ||| ||||||||| | | |||| | | ||| || | | | || || ||
Sbjct 597123 GACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGAC-ATCAATG 597065
Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591
|| || |||| ||| ||||| || || || | || ||| ||| | ||||||| |
Sbjct 597064 ATCTTGTTCAGGTTGCGCACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAG 597005
Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTG-ACGGCGATCGACGCCAAATTACAAACTGC 145650
||| || | | || | | | | | || | || |||||||| || || ||
Sbjct 597004 ACGCCCTGGTTGTAGTCGAC-GAACGAGGGCAGAGCCAGAGAGGCCAAATTGCAGACGGC 596946
Query 145651 CGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGA 145706
||| || || | || ||||| | |||||||| ||| | ||| ||| | ||
Sbjct 596945 GACCTCATCAGGTGCCG-AGTATTCAATGATCTCGGTGCAGAGATTAGAGCTGC---GGA 596890
Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT-GCACGCGTCCTTGTAGAGCATGTAC 145765
|||| ||||| || | || ||||| || | ||| ||| | |||||||||||||||| |
Sbjct 596889 TGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATG-GTCCTTGTAGAGCATGAAA 596831
Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGC 145822
|| |||||||| ||| | ||||| || | | | | || | ||| ||
Sbjct 596830 GGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGC---TTCTGGGCCTTG 596774
Query 145823 ACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882
| || || | |||||||| | ||||| ||| |||||| |||| ||| |
Sbjct 596773 ATCTTTTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCG 596714
Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942
||||| ||||| |||||| || |||| ||||| ||||| |||| ||| | |||||
Sbjct 596713 CCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTC 596654
Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCT 146002
| || || | ||| || | ||| || | ||| || || | | ||||| ||
Sbjct 596653 TTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCG 596594
Query 146003 TTGCAATCCTCAGCACCCATGTTTCGCTTC--AAATTAAGCACACT-ATAGATGTCCGCG 146059
| || || | ||||| ||| ||| | || || | ||| | ||| || | |
Sbjct 596593 CGGACCTCTTCTTTA-CCATGGTTC-TTTCGGAGATCCAGGA-ACTCAAAGACATCGGAG 596537
Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACG 146116
||||| || || | ||||| || | ||| || ||| |||||||| ||||| |||
Sbjct 596536 TGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCTTGGTCGACG 596477
Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176
| || | ||||||| || ||||| | |||||| | | || ||| | |||||
Sbjct 596476 TATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTG 596417
Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236
||| | || | |||| | || | | || | || | |||| ||| |||
Sbjct 596416 GTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCG 596357
Query 146237 CCGTACTTGGATATAGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC 146295
| |||||| || ||||| |||| ||| || || || || || |||||||| ||
Sbjct 596356 GCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAAATACCATCAATGCTGTC 596298
Query 146296 --GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353
|||| ||| ||| || ||||| || ||| ||| ||| ||||| || || |
Sbjct 596297 ATCCTTC--ATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTG 596240
Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGAT- 146412
|||| || || ||||| || || || | | ||| | || || || ||
Sbjct 596239 AACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTAAGTCTCAATA 596180
Query 146413 AGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGG 146472
| | ||| | |||||||| || || || | ||| || ||||||| ||| || || ||
Sbjct 596179 ACCCTCTCG-ATGTCGTCTCCCCAGATACCAACAGCAACACGCATGATCATATGCTGTGG 596121
Query 146473 CCGCTCC 146479
| ||||
Sbjct 596120 TCTCTCC 596114
>seq8
Length=2477967
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || |||| |||||| || | || | ||| |||||| || |||||||| |||
Sbjct 2273374 CCTCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2273315
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| ||||||||||| ||| |||| || ||||| ||||| || |||
Sbjct 2273314 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGG 2273255
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 2273254 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 2273195
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
|| | ||| | || || || || || || || ||||| ||||||||||
Sbjct 2273194 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 2273146
>seq4
Length=3212107
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| |||||| || | || | || || ||||||||||||||||| |||
Sbjct 2383425 CCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 2383366
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||||| |||||||| || ||| |||| || ||||| ||||| || |||
Sbjct 2383365 AGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGG 2383306
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || ||| ||||| | || | || |||| |||||||
Sbjct 2383305 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 2383246
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|| | ||||| ||| || || || || || || ||||
Sbjct 2383245 TCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGA 2383209
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|| || ||||| ||||||||||| ||||||| ||| || ||||| | |||||||||
Sbjct 2383851 GTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGCCATCCTCCAACTGCTTGCCA 2383792
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
|| |||| | |||||| || ||||| || || ||||| ||||| ||| || ||||
Sbjct 2383791 GCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCCTGGATCTTGCTCTTG 2383732
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | || | |||||| | ||||| | |||| ||| | || || || || | ||
Sbjct 2383731 ACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTCTTTCCCGTCAATGTC 2383672
Query 131218 TTTACGAAAATCTGCAT 131234
|| ||||| ||||||||
Sbjct 2383671 TTGACGAAGATCTGCAT 2383655
>seq3
Length=5106013
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| || ||| || ||||| ||||||||||| || |||
Sbjct 1582841 CCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 1582900
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | || || ||||| ||||| || || || ||||| ||| || ||| | | |
Sbjct 1582901 TCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGT 1582960
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || |||| ||||| | |||| ||| | ||| || || || || || || ||||
Sbjct 1582961 CGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 1583020
Query 131225 AAATCTGCA 131233
| |||||||
Sbjct 1583021 AGATCTGCA 1583029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012617095040
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