Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 163 3e-35 seq8 120 3e-22 seq4 113 4e-20 seq3 84.2 2e-11 >seq2 Length=5746313 Score = 163 bits (180), Expect = 3e-35 Identities = 923/1447 (64%), Gaps = 47/1447 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| |||||||| || | |||||||| | || | ||| || || |||| Sbjct 597538 TTGACCACCTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAGGGC 597479 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || ||| ||||||| ||||||||||| |||| || | || |||||||| |||| | Sbjct 597478 TCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATC 597419 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || | ||||| | || | || |||||| | || || || | |||| ||||| Sbjct 597418 AACAGACTGTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGCTCTCCCAGTCCCAA 597359 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || || | |||| |||||||||||| || | || |||| | | | || | Sbjct 597358 AGGTCAGATGGGGTGACGTTCCACATGTCGTATTGTAGGATACCCTGGGAGACAGGTGAG 597299 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTC---GCAACTCGCCTCCA 145352 || | ||| ||| | || | | ||||||| ||| | || || || Sbjct 597298 CCCTCGTAGGTGGAGTA--GGGTCCTTGCTCCTTGGCGATCTCCATGGAA---GCTGTCA 597244 Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412 || || ||||| |||||| || ||| |||||||| || | || || || Sbjct 597243 AGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGAGACT 597184 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472 || | |||||||| || || ||||||||| || || || || | || | |||||||| Sbjct 597183 CGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGATGG 597124 Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCGATA 145531 | || ||| ||||||||| | | |||| | | ||| || | | | || || || Sbjct 597123 GACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAGTTGAC-ATCAATG 597065 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591 || || |||| ||| ||||| || || || | || ||| ||| | ||||||| | Sbjct 597064 ATCTTGTTCAGGTTGCGCACAACAGTCTGCGTGACGTCGTGCAGCTTCTGAAAGTCATAG 597005 Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTG-ACGGCGATCGACGCCAAATTACAAACTGC 145650 ||| || | | || | | | | | || | || |||||||| || || || Sbjct 597004 ACGCCCTGGTTGTAGTCGAC-GAACGAGGGCAGAGCCAGAGAGGCCAAATTGCAGACGGC 596946 Query 145651 CGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGA 145706 ||| || || | || ||||| | |||||||| ||| | ||| ||| | || Sbjct 596945 GACCTCATCAGGTGCCG-AGTATTCAATGATCTCGGTGCAGAGATTAGAGCTGC---GGA 596890 Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT-GCACGCGTCCTTGTAGAGCATGTAC 145765 |||| ||||| || | || ||||| || | ||| ||| | |||||||||||||||| | Sbjct 596889 TGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATG-GTCCTTGTAGAGCATGAAA 596831 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGC 145822 || |||||||| ||| | ||||| || | | | | || | ||| || Sbjct 596830 GGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAGC---TTCTGGGCCTTG 596774 Query 145823 ACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882 | || || | |||||||| | ||||| ||| |||||| |||| ||| | Sbjct 596773 ATCTTTTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCCTCGAACTCATCG 596714 Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942 ||||| ||||| |||||| || |||| ||||| ||||| |||| ||| | ||||| Sbjct 596713 CCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTCCACTCTCCGTTC 596654 Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCT 146002 | || || | ||| || | ||| || | ||| || || | | ||||| || Sbjct 596653 TTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAAAGATCGCGAGCG 596594 Query 146003 TTGCAATCCTCAGCACCCATGTTTCGCTTC--AAATTAAGCACACT-ATAGATGTCCGCG 146059 | || || | ||||| ||| ||| | || || | ||| | ||| || | | Sbjct 596593 CGGACCTCTTCTTTA-CCATGGTTC-TTTCGGAGATCCAGGA-ACTCAAAGACATCGGAG 596537 Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACG 146116 ||||| || || | ||||| || | ||| || ||| |||||||| ||||| ||| Sbjct 596536 TGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCTTGGTCGACG 596477 Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176 | || | ||||||| || ||||| | |||||| | | || ||| | ||||| Sbjct 596476 TATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGATGTACCGTTG 596417 Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236 ||| | || | |||| | || | | || | || | |||| ||| ||| Sbjct 596416 GTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACCGATACCACCG 596357 Query 146237 CCGTACTTGGATATAGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC 146295 | |||||| || ||||| |||| ||| || || || || || |||||||| || Sbjct 596356 GCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAAATACCATCAATGCTGTC 596298 Query 146296 --GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353 |||| ||| ||| || ||||| || ||| ||| ||| ||||| || || | Sbjct 596297 ATCCTTC--ATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGGGCGTACCAGCGTTG 596240 Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGAT- 146412 |||| || || ||||| || || || | | ||| | || || || || Sbjct 596239 AACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTAAGTCTCAATA 596180 Query 146413 AGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGG 146472 | | ||| | |||||||| || || || | ||| || ||||||| ||| || || || Sbjct 596179 ACCCTCTCG-ATGTCGTCTCCCCAGATACCAACAGCAACACGCATGATCATATGCTGTGG 596121 Query 146473 CCGCTCC 146479 | |||| Sbjct 596120 TCTCTCC 596114 >seq8 Length=2477967 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| |||||| || | || | ||| |||||| || |||||||| ||| Sbjct 2273374 CCTCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2273315 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| || ||||| ||||| || ||| Sbjct 2273314 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGG 2273255 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 2273254 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 2273195 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || || || || || || || ||||| |||||||||| Sbjct 2273194 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 2273146 >seq4 Length=3212107 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || | || | || || ||||||||||||||||| ||| Sbjct 2383425 CCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 2383366 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| || ||||| ||||| || ||| Sbjct 2383365 AGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGG 2383306 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || |||| ||||||| Sbjct 2383305 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 2383246 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | ||||| ||| || || || || || || |||| Sbjct 2383245 TCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGA 2383209 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| ||||||||||| ||||||| ||| || ||||| | ||||||||| Sbjct 2383851 GTTGATTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGCCATCCTCCAACTGCTTGCCA 2383792 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | |||||| || ||||| || || ||||| ||||| ||| || |||| Sbjct 2383791 GCAAAGATAAGACGCTGTTGATCCGGGGGAATACCTTCCTTGTCCTGGATCTTGCTCTTG 2383732 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | |||||| | ||||| | |||| ||| | || || || || | || Sbjct 2383731 ACGTTGTCAATAGTATCCGACGACTCAACCTCGAGGGTGATCGTCTTTCCCGTCAATGTC 2383672 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 2383671 TTGACGAAGATCTGCAT 2383655 >seq3 Length=5106013 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| || ||| || ||||| ||||||||||| || ||| Sbjct 1582841 CCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 1582900 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | || || ||||| ||||| || || || ||||| ||| || ||| | | | Sbjct 1582901 TCAGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGT 1582960 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| ||||| | |||| ||| | ||| || || || || || || |||| Sbjct 1582961 CGATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 1583020 Query 131225 AAATCTGCA 131233 | ||||||| Sbjct 1583021 AGATCTGCA 1583029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012617095040