Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 239 6e-58 >seq2 Length=5746313 Score = 239 bits (264), Expect = 6e-58 Identities = 1187/1866 (64%), Gaps = 53/1866 (3%) Strand=Plus/Minus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 || || || |||||||| ||||| || || || || |||| || || ||||| ||| Sbjct 597847 GTGCGGAGGTAGTACATGCCCGTCTTCAGGCCTAGCTTCCAGCCCGTGAAGTGCATGCTC 597788 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || | ||| | || || || ||||| |||| ||| || ||| |||||| Sbjct 597787 GTGATCTTGCCCATGGTGGGGTCCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATG 597728 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 ||||| || | ||| |||||||| | | || || || | || ||||| | || Sbjct 597727 AAGGCACCACGGTCGGCAGCCATCTGCACAACGGTTCGCTGAGAGATCTCCCACACGGTC 597668 Query 62060 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 62116 || || | ||| || || | |||| ||| | | ||||| ||||| ||||| || Sbjct 597667 TTGTACAGGGCCTTGATCTCCGCCGGAATGTTGGGAATGTTCTGGATGGAACCACCCTCA 597608 Query 62117 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62176 || || || | |||||| || | || ||| | | ||| | | | || Sbjct 597607 GCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGC 597548 Query 62177 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62236 || || || || || || || || |||| | || | |||| ||| || || Sbjct 597547 AGCCAGGGGTTGACCACCTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGAT 597488 Query 62237 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62296 ||||| || || | | |||| || || |||| || |||| || ||||| |||||| Sbjct 597487 GTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATA 597428 Query 62297 GGTGCCACCAATAAACTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTC 62355 || |||| ||| | ||| || | | ||| | || | |||| | ||||| || || Sbjct 597427 GGAGCCATCAACAGACTGTTGCGGACACCATTCTGCT-TGATCTGCTCTTTGAGGCTCTC 597369 Query 62356 CCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 62415 ||| | |||||| || || || || |||||| ||||| || Sbjct 597368 CCAGTCCCAAAGGTCAGATGGGGTGACGTTCCACATGTCGTATTGTAGGATACC----CT 597313 Query 62416 GGCGTAC----GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAAC 62471 || || || || | || || ||| ||||||| || || || | || || Sbjct 597312 GGGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTC-CATG 597254 Query 62472 TCGCCTCT-AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT--CTTGCG 62528 || | || ||||| | |||||||| |||||||||| ||| || || | || || Sbjct 597253 GAAGCTGTCAAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGC- 597195 Query 62529 CTTCCAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 62587 || | || | || || || | | | ||| || || || | ||||| ||| Sbjct 597194 CT--CGGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACA 597137 Query 62588 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62647 || | ||||| || | |||| | | || | | || ||| ||| ||| || || Sbjct 597136 CCGAGGCCGATGGGACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAG 597077 Query 62648 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC-ACATCCTTCAGTTT 62706 || | ||| || || || || || || | |||| | | || || || | ||| || Sbjct 597076 TTGACATCAATGATCTTGTTCAGGTTGCGCACAAC-AGTCTGCGTGACGTCGTGCAGCTT 597018 Query 62707 GAGAAAATCAAAT-CGCCCA---TCTATT--ACAAACATGTTCAATGCAACAGATGCCAG 62760 |||| ||| | ||||| | || | || ||| | || || | ||| |||| Sbjct 597017 CTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCAA 596958 Query 62761 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 62820 ||| || ||||| ||||||| || ||| |||| || ||||| ||||| |||||| Sbjct 596957 ATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCAGAGATTAGA 596898 Query 62821 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCATCCTTATAAA 62879 | |||||| || | || | ||| |||||||| ||| || | ||||| || | Sbjct 596897 GCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-TCCTTGTAGA 596839 Query 62880 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GA 62938 | ||||| || ||||||| || |||| | || | ||| || | ||||| | || | Sbjct 596838 GCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA-GCTTCTGG 596780 Query 62939 GCCTTTATTATAGATTTGT--ATCTCTTTTCTCTT--TCGTA--TAGTGTATACAATCGT 62992 ||||| || | |||| | ||| ||| ||||| | ||| | | Sbjct 596779 GCCTTGATCTT----TTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCC-- 596726 Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 |||||||| || || |||||| | |||| ||||| || |||| || ||||| | || | Sbjct 596725 TCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTC 596666 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 |||||||||| | || || |||||||| |||||||| |||||||| || || | || Sbjct 596665 CACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAA 596606 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 ||||| | | | || || || || |||||| ||||| |||||| | | Sbjct 596605 AGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAG 596546 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | ||| || ||||| || || | || || || | | ||||| || ||||| || || Sbjct 596545 ACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCT 596486 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | ||||| ||| ||||| || | || | | ||| |||| ||||||||||||| Sbjct 596485 TGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGAT 596426 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 ||||| ||||| || | |||||| || | ||||||||| || ||||| Sbjct 596425 GTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACCG 596366 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412 || || || ||||| || ||||| | ||||| || | || ||||| || || || Sbjct 596365 ATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACCATCA 596306 Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGT 63468 || || |||||| |||||| | || || || |||| | ||| | || || Sbjct 596305 ATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACA---GCTGA-GCCTGGGGCGT 596250 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 || || || || | |||||||| ||||| || || | || || | || ||||| Sbjct 596249 ACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTA 596190 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||||||| | || || || | || || || || |||||||| | ||| Sbjct 596189 AGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACGCATGATCAT 596130 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 ||||| ||||| || || |||||| || | |||| | || ||| |||||||| Sbjct 596129 ATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCGCTCCAAAGT 596070 Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 || || || || || | ||| ||||| || ||||| | ||| | |||| ||| | Sbjct 596069 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCGGAGTCGAGGTC 596010 Query 63709 ATCCTT 63714 ||||| Sbjct 596009 CTCCTT 596004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631754467600