Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq2 239 6e-58
>seq2
Length=5746313
Score = 239 bits (264), Expect = 6e-58
Identities = 1187/1866 (64%), Gaps = 53/1866 (3%)
Strand=Plus/Minus
Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939
|| || || |||||||| ||||| || || || || |||| || || ||||| |||
Sbjct 597847 GTGCGGAGGTAGTACATGCCCGTCTTCAGGCCTAGCTTCCAGCCCGTGAAGTGCATGCTC 597788
Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999
|| | ||| | || || || ||||| |||| ||| || ||| ||||||
Sbjct 597787 GTGATCTTGCCCATGGTGGGGTCCCGCATGTGGATGTTCAAAGACTGGGATTGGTCGATG 597728
Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059
||||| || | ||| |||||||| | | || || || | || ||||| | ||
Sbjct 597727 AAGGCACCACGGTCGGCAGCCATCTGCACAACGGTTCGCTGAGAGATCTCCCACACGGTC 597668
Query 62060 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCT 62116
|| || | ||| || || | |||| ||| | | ||||| ||||| ||||| ||
Sbjct 597667 TTGTACAGGGCCTTGATCTCCGCCGGAATGTTGGGAATGTTCTGGATGGAACCACCCTCA 597608
Query 62117 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62176
|| || || | |||||| || | || ||| | | ||| | | | ||
Sbjct 597607 GCAATGATACGATTCTTCATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGC 597548
Query 62177 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62236
|| || || || || || || || |||| | || | |||| ||| || ||
Sbjct 597547 AGCCAGGGGTTGACCACCTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGAT 597488
Query 62237 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62296
||||| || || | | |||| || || |||| || |||| || ||||| ||||||
Sbjct 597487 GTATAGGGCTCGAAACACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATA 597428
Query 62297 GGTGCCACCAATAAACTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTC 62355
|| |||| ||| | ||| || | | ||| | || | |||| | ||||| || ||
Sbjct 597427 GGAGCCATCAACAGACTGTTGCGGACACCATTCTGCT-TGATCTGCTCTTTGAGGCTCTC 597369
Query 62356 CCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 62415
||| | |||||| || || || || |||||| ||||| ||
Sbjct 597368 CCAGTCCCAAAGGTCAGATGGGGTGACGTTCCACATGTCGTATTGTAGGATACC----CT 597313
Query 62416 GGCGTAC----GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAAC 62471
|| || || || | || || ||| ||||||| || || || | || ||
Sbjct 597312 GGGAGACAGGTGAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTC-CATG 597254
Query 62472 TCGCCTCT-AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT--CTTGCG 62528
|| | || ||||| | |||||||| |||||||||| ||| || || | || ||
Sbjct 597253 GAAGCTGTCAAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGC- 597195
Query 62529 CTTCCAGGCTA-TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 62587
|| | || | || || || | | | ||| || || || | ||||| |||
Sbjct 597194 CT--CGGGAGACTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACA 597137
Query 62588 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62647
|| | ||||| || | |||| | | || | | || ||| ||| ||| || ||
Sbjct 597136 CCGAGGCCGATGGGACGGTGTCGCATGTTGCTGTTGCGCGCCTCTTGAACAGGGTAGTAG 597077
Query 62648 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC-ACATCCTTCAGTTT 62706
|| | ||| || || || || || || | |||| | | || || || | ||| ||
Sbjct 597076 TTGACATCAATGATCTTGTTCAGGTTGCGCACAAC-AGTCTGCGTGACGTCGTGCAGCTT 597018
Query 62707 GAGAAAATCAAAT-CGCCCA---TCTATT--ACAAACATGTTCAATGCAACAGATGCCAG 62760
|||| ||| | ||||| | || | || ||| | || || | ||| ||||
Sbjct 597017 CTGAAAGTCATAGACGCCCTGGTTGTAGTCGACGAACGAGGGCAGAGCCAGAGAGGCCAA 596958
Query 62761 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 62820
||| || ||||| ||||||| || ||| |||| || ||||| ||||| ||||||
Sbjct 596957 ATTGCAGACGGCGACCTCATCAGGTGCCGAGTATTCAATGATCTCGGTGCAGAGATTAGA 596898
Query 62821 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCATCCTTATAAA 62879
| |||||| || | || | ||| |||||||| ||| || | ||||| || |
Sbjct 596897 GCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATGG-TCCTTGTAGA 596839
Query 62880 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GA 62938
| ||||| || ||||||| || |||| | || | ||| || | ||||| | || |
Sbjct 596838 GCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGA-GCTTCTGG 596780
Query 62939 GCCTTTATTATAGATTTGT--ATCTCTTTTCTCTT--TCGTA--TAGTGTATACAATCGT 62992
||||| || | |||| | ||| ||| ||||| | ||| | |
Sbjct 596779 GCCTTGATCTT----TTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGCC-- 596726
Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052
|||||||| || || |||||| | |||| ||||| || |||| || ||||| | || |
Sbjct 596725 TCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGTC 596666
Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112
|||||||||| | || || |||||||| |||||||| |||||||| || || | ||
Sbjct 596665 CACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAA 596606
Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172
||||| | | | || || || || |||||| ||||| |||||| | |
Sbjct 596605 AGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAAG 596546
Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232
| ||| || ||||| || || | || || || | | ||||| || ||||| || ||
Sbjct 596545 ACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACCT 596486
Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292
|| || | ||||| ||| ||||| || | || | | ||| |||| |||||||||||||
Sbjct 596485 TGGTCGACGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCATTGGAT 596426
Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352
||||| ||||| || | |||||| || | ||||||||| || |||||
Sbjct 596425 GTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTGAGACCG 596366
Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412
|| || || ||||| || ||||| | ||||| || | || ||||| || || ||
Sbjct 596365 ATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAATACCATCA 596306
Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGT 63468
|| || |||||| |||||| | || || || |||| | ||| | || ||
Sbjct 596305 ATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACA---GCTGA-GCCTGGGGCGT 596250
Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528
|| || || || | |||||||| ||||| || || | || || | || |||||
Sbjct 596249 ACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTACTTGCTGGACATGAGGTTGTA 596190
Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588
||||||||| | || || || | || || || || |||||||| | |||
Sbjct 596189 AGTCTCAATAACCCTCTCGATGTCGTCTCCCCAGATACCAACAGCAACACGCATGATCAT 596130
Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648
||||| ||||| || || |||||| || | |||| | || ||| ||||||||
Sbjct 596129 ATGCTGTGGTCTCTCCACAATCTTGCCATTAAGCTTCAGGAGATATGATCGCTCCAAAGT 596070
Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708
|| || || || || | ||| ||||| || ||||| | ||| | |||| ||| |
Sbjct 596069 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATGGCGGAGTCGAGGTC 596010
Query 63709 ATCCTT 63714
|||||
Sbjct 596009 CTCCTT 596004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631754467600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |