Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 120 3e-22
seq3 91.5 1e-13
>seq4
Length=3212107
Score = 120 bits (132), Expect = 3e-22
Identities = 159/217 (73%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| |||||||||||||| || ||||||| | || || ||||| ||
Sbjct 2383427 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGTCATCG 2383486
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| ||||| || |||| ||||| | ||| ||||| || || ||||| |||||
Sbjct 2383487 GATACTATTGACAACGTCAAG--AGCAAGAT-TCAG-GACAAGGAGGGTATTCCTCCTGA 2383542
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|||||| || | || ||||||||||| || || || |||| || ||| || | || ||
Sbjct 2383543 CCAACAACGATTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGAACTCTGAGTGACTA 2383602
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
||| || || ||||| || || | ||| | || |||
Sbjct 2383603 CAACATCCAGAAAGAGTCTACCTTGCATCTGGTTCTA 2383639
Score = 102 bits (112), Expect = 7e-17
Identities = 163/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051
|| ||| ||||| || || || ||||| | ||||| || ||||||| |||| || ||
Sbjct 2382899 CGCAACCATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGA 2382958
Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
||| || ||||||||||| ||||| || ||| ||||| || || || || ||
Sbjct 2382959 GTCCTCCGACACTATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCC 2383018
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
|||||||||||| | || ||||||||||| ||| | || || | ||||| | ||
Sbjct 2383019 TGACCAACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGA 2383078
Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||| || || || || ||| || || | || || | ||| | |||||
Sbjct 2383079 CTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTCCTCCGTCTACGTGGAGG 2383132
>seq3
Length=5106013
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
||| |||| || || || ||||| | || || || ||||||| |||| |||||||||
Sbjct 1583033 ACAGTGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCG 1582974
Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| ||||| ||||| || || ||| || ||| ||||| || || ||||| || |
Sbjct 1582973 TCCGACACCATCGA--CAATGTTAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCCG 1582916
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
||||||| || | || ||||| ||||| || | || |||| || || || ||| |
Sbjct 1582915 ACCAACAACGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGTCCGACT 1582856
Query 25174 ACAATATTCAAAA 25186
|||| || || ||
Sbjct 1582855 ACAACATCCAGAA 1582843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327836283265
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |