Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4 120 3e-22 seq3 91.5 1e-13 >seq4 Length=3212107 Score = 120 bits (132), Expect = 3e-22 Identities = 159/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||||||||||| || ||||||| | || || ||||| || Sbjct 2383427 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGTCATCG 2383486 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || |||| ||||| | ||| ||||| || || ||||| ||||| Sbjct 2383487 GATACTATTGACAACGTCAAG--AGCAAGAT-TCAG-GACAAGGAGGGTATTCCTCCTGA 2383542 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | || ||||||||||| || || || |||| || ||| || | || || Sbjct 2383543 CCAACAACGATTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGAACTCTGAGTGACTA 2383602 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||| || || ||||| || || | ||| | || ||| Sbjct 2383603 CAACATCCAGAAAGAGTCTACCTTGCATCTGGTTCTA 2383639 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 || ||| ||||| || || || ||||| | ||||| || ||||||| |||| || || Sbjct 2382899 CGCAACCATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGA 2382958 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||| || ||||||||||| ||||| || ||| ||||| || || || || || Sbjct 2382959 GTCCTCCGACACTATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCC 2383018 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 |||||||||||| | || ||||||||||| ||| | || || | ||||| | || Sbjct 2383019 TGACCAACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGA 2383078 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || || || ||| || || | || || | ||| | ||||| Sbjct 2383079 CTACAACATCCAGAAGGAGAGCACCCTCCACCTCGTCCTCCGTCTACGTGGAGG 2383132 >seq3 Length=5106013 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||| |||| || || || ||||| | || || || ||||||| |||| ||||||||| Sbjct 1583033 ACAGTGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCG 1582974 Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||| ||||| || || ||| || ||| ||||| || || ||||| || | Sbjct 1582973 TCCGACACCATCGA--CAATGTTAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCCG 1582916 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| || | || ||||| ||||| || | || |||| || || || ||| | Sbjct 1582915 ACCAACAACGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGTCCGACT 1582856 Query 25174 ACAATATTCAAAA 25186 |||| || || || Sbjct 1582855 ACAACATCCAGAA 1582843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327836283265