Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 136 3e-27 seq3 107 2e-18 >seq4 Length=3212107 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| ||||| || || |||| ||||| || || | | Sbjct 2383427 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTTGAGTCATCG 2383486 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| || ||||| ||||||||||||||||| || || ||| Sbjct 2383487 GATACTATTGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAA 2383546 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||||||||| ||||| |||||| ||| || | || |||||| Sbjct 2383547 CAACGATTGATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGAACTCTGAGTGACTACAAC 2383606 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || ||| | ||| | ||| | || |||| || ||| Sbjct 2383607 ATCCAGAAAGAGTCTACCTTGCATCTGGTTCTACGTCTGCGTGGTGGT 2383654 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || ||| |||| || || || || | | Sbjct 2383655 ATGCAGATCTTCGTCAAGACATTGACGGGAAAGACGATCACCCTCGAGGTTGAGTCGTCG 2383714 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| || || || |||||||| |||||||| || |||||| Sbjct 2383715 GATACTATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGTATTCCCCCGGATCAA 2383774 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| ||||| |||||| ||| ||| | ||| |||||| Sbjct 2383775 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCTTGAGCGACTACAAC 2383834 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || ||||| || Sbjct 2383835 ATTCAGAAGGAATCAAC 2383851 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 22258 ACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAG 22317 || ||||| || || | |||| ||| | ||| || |||| || |||||||||||| Sbjct 2383238 ACCCTTGAGGTCGAGTCGTCCGACACCATCGACAATGTCAAGTCGAAGATTCAAGACAAG 2383297 Query 22318 GAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377 ||||| || || || || ||||| || | || || || || || ||| | |||||| Sbjct 2383298 GAGGGCATCCCGCCTGACCAACAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGA 2383357 Query 22378 CGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTG 22437 || ||| ||||||| |||||||||||||| |||||||| | || | || |||| || Sbjct 2383358 CGTACCCTCTCCGACTACAACATTCAAAAGGAATCCACTCTCCACCTTGTCCTGCGTCTG 2383417 Query 22438 CGCGGAGGT 22446 || || ||| Sbjct 2383418 CGTGGTGGT 2383426 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || ||||||| || || || || || Sbjct 2382906 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 2382965 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || ||||||||||| || || || || ||| Sbjct 2382966 GACACTATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAA 2383025 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||||||||| || | ||||| ||||||| |||| || |||||| Sbjct 2383026 CAGCGTTTGATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCGGACTACAAC 2383085 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 2383086 ATCCAGAAGGA 2383096 >seq3 Length=5106013 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| || || || || || | || || || || |||| || || ||||| | ||| Sbjct 1583029 TGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCGTCCG 1582970 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | ||| | ||| || | || || || || ||||||||||| ||||| ||||| |||| Sbjct 1582969 ACACCATCGACAATGTTAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAAC 1582910 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 |||| || || ||||| ||||| ||| | |||||| ||| ||| | ||||| ||||||| Sbjct 1582909 AACGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTGTCCGACTACAACA 1582850 Query 22400 TTCAAAA 22406 | || || Sbjct 1582849 TCCAGAA 1582843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727841421515