Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 111 3e-19 seq6 98.7 2e-15 seq12 86.0 1e-11 seq8 86.0 1e-11 seq4 86.0 1e-11 >seq2 Length=5746313 Score = 111 bits (122), Expect = 3e-19 Identities = 269/405 (66%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| |||||||||| ||||||||||||||||||||| ||| Sbjct 3731666 TCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 3731607 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||| ||| | ||| || || | || || ||||| || |||||||| | Sbjct 3731606 GCGCGGTACACCTTCTCGTTGCCGAGAGCAAGGAGGAGACGGTCCGCAACAAACTCAATG 3731547 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || ||| || | |||||||| || | || ||||| | ||||| | | Sbjct 3731546 TATTGCTTCATGAGGTTGGAGTTCATTCCCAGCAGGGCGCAAGGGAGGGCCTCTGTCAAG 3731487 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT----TG--CCTTCACCTGTGCCAGA 251796 || || | || | || || || || | || || ||||| ||| ||| | Sbjct 3731486 AACTCTTGCTCAATAGCGACAGCATCAGTGATGATCTTCTGGACCTTCTCCT-TGCTGGG 3731428 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCG 251856 | | |||| ||| | ||| |||| || |||| | ||| || |||||| Sbjct 3731427 GCGA-----TTCTTCAGGTGGGAGAACAGCAGGCAAGCAAAGTCAGTGTGTAGGCCCTCG 3731373 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || || ||| ||||||||||| | |||||||||||||| ||||| ||| ||||| Sbjct 3731372 TCACGCGAGATCAACTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCACGCTTCTTGAGC 3731313 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 |||||||| | | |||| || ||| | | |||||||||| Sbjct 3731312 CAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACA 3731268 >seq6 Length=2893484 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| ||||| || |||||||| || || || || || || ||||| |||||| Sbjct 2337834 TCTCGTATTGCCGTCATCGGTCCCAATGGCGCTGGCAAATCCACACTGATCAATGTCCTG 2337775 Query 280221 ACTGGCGAGACCCAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| || || || || || | ||| ||| | || ||||| || || || Sbjct 2337774 ACTGGTGA-ACTCATTCCCACCGCGGGTGAGATTTACCAACACGAGAACATCCGTATCGC 2337716 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||| ||| |||||| || ||||||||||||| ||| || | Sbjct 2337715 GTACATCAAGCAGCACGCGTTCGCCCACATTGATAACCACCTGGACAAGACCCCCTCGGA 2337656 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 |||||| |||||||| | | || | ||| |||||| |||| | |||| || Sbjct 2337655 ATACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGGGAGACCATGGACCG 2337605 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| ||| ||||| | | |||||||| || || ||||| ||||| | Sbjct 2337278 CCAACTTTGGTCTCGACGCCGAGCTAGTTTCCCACTCTCGTATGCGTGGTCTGTCTGGTG 2337219 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| ||||| | || ||||| ||||||| || ||| |||| || Sbjct 2337218 GCCAGCGTGTCAAGGTTGTCTTGTCCGCTTGCTCT-TGGCAACGTCCCCACTTGATTGTA 2337160 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||||||||||||||||| ||||| || Sbjct 2337159 CTAGACGAGCCTACCAACTATCTCGACCGTGA 2337128 >seq12 Length=1385634 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 609022 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 608963 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 608962 CCCGCATCGGGC 608951 >seq8 Length=2477967 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 1633157 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 1633216 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 1633217 CCCGCATCGGGC 1633228 >seq4 Length=3212107 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 2624593 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 2624652 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 2624653 CCCGCATCGGGC 2624664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836391756071