Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 3e-19
seq6 98.7 2e-15
seq12 86.0 1e-11
seq8 86.0 1e-11
seq4 86.0 1e-11
>seq2
Length=5746313
Score = 111 bits (122), Expect = 3e-19
Identities = 269/405 (66%), Gaps = 12/405 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|| ||||| || | |||||| |||||||||| ||||||||||||||||||||| |||
Sbjct 3731666 TCAAAGAAGTTGGTCTTGCCTCCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 3731607
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| |||| ||| | ||| || || | || || ||||| || |||||||| |
Sbjct 3731606 GCGCGGTACACCTTCTCGTTGCCGAGAGCAAGGAGGAGACGGTCCGCAACAAACTCAATG 3731547
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
|| || ||| || | |||||||| || | || ||||| | ||||| | |
Sbjct 3731546 TATTGCTTCATGAGGTTGGAGTTCATTCCCAGCAGGGCGCAAGGGAGGGCCTCTGTCAAG 3731487
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT----TG--CCTTCACCTGTGCCAGA 251796
|| || | || | || || || || | || || ||||| ||| ||| |
Sbjct 3731486 AACTCTTGCTCAATAGCGACAGCATCAGTGATGATCTTCTGGACCTTCTCCT-TGCTGGG 3731428
Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCG 251856
| | |||| ||| | ||| |||| || |||| | ||| || ||||||
Sbjct 3731427 GCGA-----TTCTTCAGGTGGGAGAACAGCAGGCAAGCAAAGTCAGTGTGTAGGCCCTCG 3731373
Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916
|| || ||| ||||||||||| | |||||||||||||| ||||| ||| |||||
Sbjct 3731372 TCACGCGAGATCAACTCGTTGGAGAAGGTCAGGCCAGGCATCAGACCACGCTTCTTGAGC 3731313
Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961
|||||||| | | |||| || ||| | | ||||||||||
Sbjct 3731312 CAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACA 3731268
>seq6
Length=2893484
Score = 98.7 bits (108), Expect = 2e-15
Identities = 164/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220
|| || |||| ||||| || |||||||| || || || || || || ||||| ||||||
Sbjct 2337834 TCTCGTATTGCCGTCATCGGTCCCAATGGCGCTGGCAAATCCACACTGATCAATGTCCTG 2337775
Query 280221 ACTGGCGAGACCCAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279
||||| || || || || || | ||| ||| | || ||||| || || ||
Sbjct 2337774 ACTGGTGA-ACTCATTCCCACCGCGGGTGAGATTTACCAACACGAGAACATCCGTATCGC 2337716
Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339
||| || |||||||| ||| |||||| || ||||||||||||| ||| || |
Sbjct 2337715 GTACATCAAGCAGCACGCGTTCGCCCACATTGATAACCACCTGGACAAGACCCCCTCGGA 2337656
Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
|||||| |||||||| | | || | ||| |||||| |||| | |||| ||
Sbjct 2337655 ATACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGGGAGACCATGGACCG 2337605
Score = 91.5 bits (100), Expect = 3e-13
Identities = 113/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | ||||| ||| ||||| | | |||||||| || || ||||| ||||| |
Sbjct 2337278 CCAACTTTGGTCTCGACGCCGAGCTAGTTTCCCACTCTCGTATGCGTGGTCTGTCTGGTG 2337219
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790
||||| ||||| ||||| | || ||||| ||||||| || ||| |||| ||
Sbjct 2337218 GCCAGCGTGTCAAGGTTGTCTTGTCCGCTTGCTCT-TGGCAACGTCCCCACTTGATTGTA 2337160
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| |||||||||||||||||||| ||||| ||
Sbjct 2337159 CTAGACGAGCCTACCAACTATCTCGACCGTGA 2337128
>seq12
Length=1385634
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 609022 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 608963
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 608962 CCCGCATCGGGC 608951
>seq8
Length=2477967
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 1633157 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 1633216
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 1633217 CCCGCATCGGGC 1633228
>seq4
Length=3212107
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 2624593 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 2624652
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 2624653 CCCGCATCGGGC 2624664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836391756071
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |