Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq8 176 8e-39
seq4 163 5e-35
seq3 152 9e-32
seq2 116 7e-21
seq6 89.7 9e-13
>seq8
Length=2477967
Score = 176 bits (194), Expect = 8e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || |||| || | ||| || ||| ||| || |||||||| || ||||||
Sbjct 2273374 CCTCCACGCAGACGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2273315
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || | | ||||||||||| ||
Sbjct 2273314 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGG 2273255
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 2273254 ATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 2273195
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || |||||||||||||||||||| |||||||| ||
Sbjct 2273194 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 2273145
>seq4
Length=3212107
Score = 163 bits (180), Expect = 5e-35
Identities = 168/220 (76%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| || | ||| || ||||| || ||||| ||||| || ||||||
Sbjct 2383425 CCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAG 2383366
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || | || |||||||| || ||
Sbjct 2383365 AGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGCGGG 2383306
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||||||||| | |||||| ||||||||||| | || || ||
Sbjct 2383305 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 2383246
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454
|| | ||| ||||| || || |||||||||||||||| ||
Sbjct 2383245 TCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACGACTA 2383206
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | || | ||| || ||| ||| || |||||||| || || |||
Sbjct 2383132 CCTCCACGTAGACGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 2383073
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||| ||||| || || | | |||||||| || ||
Sbjct 2383072 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCAGGCGGG 2383013
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||| ||| ||||| ||||| | || || ||
Sbjct 2383012 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATAGTGTCGGAGGACTCGACC 2382953
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||||||||| ||||| ||||||||
Sbjct 2382952 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2382906
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| ||| || || || || || || ||||| || |||
Sbjct 2383881 CCGCCACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCTC 2383822
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || |||||||| || || || || || | ||||| || || |||
Sbjct 2383821 AAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGA 2383762
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||||||||| || ||||| ||||||| || || || || | || || ||
Sbjct 2383761 ATACCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAACC 2383702
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || |||||||| | ||||||||||| ||||||||
Sbjct 2383701 TCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655
>seq3
Length=5106013
Score = 152 bits (168), Expect = 9e-32
Identities = 146/187 (78%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || ||||| || || | ||||| || | |||||| || || || ||
Sbjct 1582843 TTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 1582902
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | |||||||||||| |||||||| |||||||| || ||||| | ||| || |||
Sbjct 1582903 AGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGTCG 1582962
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
|||||||| | || || || || | ||||||||| || |||||||||||||| |||||
Sbjct 1582963 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 1583022
Query 68454 ATCTGCA 68460
|||||||
Sbjct 1583023 ATCTGCA 1583029
>seq2
Length=5746313
Score = 116 bits (128), Expect = 7e-21
Identities = 312/472 (66%), Gaps = 10/472 (2%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|||||| || ||||||||||| || || || ||| |||||||||| |||||| |
Sbjct 3731703 CATGACACCAGCCTTCTGGTATTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCTCC 3731644
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| || ||| |||||||||||| |||||||| ||||| || ||| || ||
Sbjct 3731643 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGCGGTACACCTTCTCGTTGCC 3731584
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || || | ||||| || || ||||| ||||| || |||| |||| |||||
Sbjct 3731583 GAGAGCAAGGAGGAGACGGTCCGCAACAAACTCAATGTATTGCTTCATGAGGTTGGAGTT 3731524
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
||| || | || | ||| |||| ||| || | ||| || | || | ||||| ||
Sbjct 3731523 CATTCCCAGCAGGGCGCAAGGGAGGGCCTCTGTCAAGAACTCTTGCTCAATAGCGACAGC 3731464
Query 10175 TTCCTCGACGATGCTCTTTACC----ACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230
|| || ||| ||| ||| | | ||| | | || ||| || | ||
Sbjct 3731463 ATCAGTGATGATCTTCTGGACCTTCTCCTTGCTGGGGC-GATTCTTC---AGGTGGGAGA 3731408
Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
|||| || |||| | ||| ||||||||||| || ||| ||||||||||| |
Sbjct 3731407 ACAGCAGGCAAGCAAAGTCAGTGTGTAGGCCCTCGTCACGCGAGATCAACTCGTTGGAGA 3731348
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350
| ||| || ||||| || || || || |||||||| |||| | ||| | |||
Sbjct 3731347 AGGTCAGGCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGC 3731288
Query 10351 AGAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401
||| | | |||||| || ||| | ||||||| | ||| | || ||||
Sbjct 3731287 TGAAGAAGATACCCTCGACAGCA-GCGAAGGCGACCAAGCGTTGAGCAAAGG 3731237
>seq6
Length=2893484
Score = 89.7 bits (98), Expect = 9e-13
Identities = 130/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877
||||| ||||| | ||| | || || ||||| | || ||| |||||| | |||
Sbjct 2338478 GGGAAACCCTCGACCTGCTCGTTGTTGATAGCACGCATGAGAGTAGACTTGCCGGAACCG 2338537
Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGC-GTGGAGTTCAG 225936
|| || ||| ||| |||||| | |||||||| | | || | || || ||| ||
Sbjct 2338538 TTCGGGCCGCAGAGACCGTAACGTCGGCCGCGCTTCA-GACGAAGAGCAGTCTGGTTGAG 2338596
Query 225937 GAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996
||||||||| |||| |||||||| ||||| ||||| ||| || ||||||||||||||
Sbjct 2338597 AAGGATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAATTGCAGAGATCCTCACCCTCCTC 2338656
Query 225997 G 225997
|
Sbjct 2338657 G 2338657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622042871320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |