Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 seq3 89.7 4e-13 >seq4 Length=3212107 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | ||| | || | || ||||| || ||||||||||| ||||| Sbjct 2383882 ACCGCCACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCGCT 2383823 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| ||| || | || || ||||| |||| ||||||||||| ||||| || Sbjct 2383822 CAAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGG 2383763 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | |||| || || | || || || Sbjct 2383762 AATACCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATAGTATCCGACGACTCAAC 2383703 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||| || || |||| || || || || |||||||| Sbjct 2383702 CTCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || | || | || ||||| |||||||||||||| ||| Sbjct 2383428 ATACCACCACGCAGACGCAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG 2383369 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || || || ||||||||| |||| | ||||||||||| || Sbjct 2383368 GAGAGGGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGTTGGTCAGGC 2383309 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||| || | | || | |||||||| || ||| Sbjct 2383308 GGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCG 2383249 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | ||| | || ||||| || || || || || Sbjct 2383248 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 2383211 >seq3 Length=5106013 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || || |||||||| ||| || ||||| ||| ||||| || || ||||| |||| Sbjct 1582843 TTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATC 1582902 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 || || |||||||| ||||||||||| || ||||| ||||| || | | || Sbjct 1582903 AGGCGTTGTTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTAACATTGTCG 1582962 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | |||||||| || || || || | ||| | || ||||| || || || || || || Sbjct 1582963 ATGGTGTCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 1583022 Query 114375 ATCTGCA 114381 ||||||| Sbjct 1583023 ATCTGCA 1583029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134241267972