Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2 313 5e-80
>seq2
Length=5746313
Score = 313 bits (346), Expect = 5e-80
Identities = 1117/1723 (65%), Gaps = 81/1723 (5%)
Strand=Plus/Minus
Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800
||||||||| || | ||||||||| ||| | |||||||||||||| ||||| || |
Sbjct 597876 TGAACTGGATAGGCTGGGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGTCTTCAGGC 597817
Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860
| |||| | || ||||||| ||| | ||| ||| || | ||
Sbjct 597816 CTAGCTTCCAGCCCGTGAAGTGCATGCTCGTGATCTTGCCCATGGTGGG---------GT 597766
Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920
|| | || || ||| | |||||| ||||||| ||||| | || || || |
Sbjct 597765 CC---CGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAAGGCACCACGGTCGGCAG 597709
Query 243921 CCATGGTGATGA-GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG 243979
|||| | | ||| | |||||| ||||| || | |||||||| | || |||||
Sbjct 597708 CCATCTGCACAACGGTTCG-CTGAGAGATCTCCCACACGGTCTTGTACAGGGCCTTGATC 597650
Query 243980 TGCTCGGGGAACCCTTCGA-TGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG 244038
| | | || || | || ||||||| | || || | | |||| | |
Sbjct 597649 TCCGCCGG-AATGTTGGGAATGTTCTGGATGGAACCACCCTCAGCAATGATACGATTCTT 597591
Query 244039 CATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCAC 244098
|||||| ||| |||||| |||| | | || ||| | ||| ||| |||||
Sbjct 597590 CATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCAC 597531
Query 244099 CTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGC-TGCTGAGCGGCTCGATGC 244157
||| ||||| || | || || || || ||||| |||| || || ||||||| |
Sbjct 597530 CTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAG-GGCTCGAAAC 597472
Query 244158 TCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGAC 244217
||| |||||||||| ||||| | || || ||||| ||||| || | || || |||||
Sbjct 597471 ACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGAC 597412
Query 244218 TGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAG-CTCGTTCCAGTCCCACATGCCC 244276
|||| | || || | | || ||| | | |||| ||| | ||||||||| | | |
Sbjct 597411 TGTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGCTC-TCCCAGTCCCAAAGGTCA 597353
Query 244277 GAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGG 244336
|| || ||| | ||||||||| | || || | |||| | ||| ||
Sbjct 597352 GATGGGG---------TGACGTTCCACATGTCGTATTGTAGGATACCCTGGGAGACAGGT 597302
Query 244337 CTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTAC----AGCTCTCGTC 244392
|||||||||||| | |||||| || | || ||| | || |||| ||
Sbjct 597301 GAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAAGCTGTC--- 597245
Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCA 244452
| ||| | | ||| ||||||||||||||| |||||| | | | |||| | |
Sbjct 597244 -AAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGAGA 597186
Query 244453 GGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512
||| || |||| | | || | || || || || || || |||| ||||||
Sbjct 597185 CTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGAT 597126
Query 244513 GGGTCTGTGTCGCTTGTTGGAG---CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569
||| | ||||||| ||||| | ||| || || | || ||||| ||||| | ||
Sbjct 597125 GGGACGGTGTCGCATGTTGCTGTTGCGC---GCCTCTTGAACAGGGTAGTAGTTGACATC 597069
Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCA---TGCGGACGACGTCGGCCAGCAGCTGAAA 244626
|| | |||||| |||||||| | || |||| ||||||| |||| ||||||
Sbjct 597068 AATGATCTTGTTCAGGTTGCGCACAA-CAGTCTGCGT--GACGTCGTGCAGCTTCTGAAA 597012
Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686
||| || || ||| | | || || || ||| | || || |
Sbjct 597011 GTCATAGACGC------CCTGG----TTGTAGTCG--ACGAACGAGGGCAGAGCCAGAGA 596964
Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG--GTGTACTGGACAATCTCGGTGCAG 244744
||||| ||||||||||| ||||| || || || | ||| | | ||||||||||||
Sbjct 596963 GGCCAAATTGCAGACGGCGACCTCATC--AGGTGCCGAGTATTCAATGATCTCGGTGCAG 596906
Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG-CAGGCGTC 244803
|| ||| || |||||||||||||| || || || |||| |||| || | |||
Sbjct 596905 AGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATG-GTC 596847
Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863
||||||||||||||| || || |||||| |||||| | || | | ||||||
Sbjct 596846 CTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAG 596787
Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923
| | ||||||| | | ||| | |||||| |||||||| ||| |||||
Sbjct 596786 CTTCTGGGCCTTGATCTTTTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGC 596727
Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983
||||||||| ||| | || ||| | ||||| |||||| |||||||| || |
Sbjct 596726 CTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGT 596667
Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043
|||||| ||| | || || | | ||||||||| ||||| ||||||||||| ||||
Sbjct 596666 CCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAA 596607
Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103
|| || | | | ||| || ||| |||||| | || |||| || |||||
Sbjct 596606 AAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAA 596547
Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163
||| ||| |||||||||||| | |||| ||| | ||| || || ||||||||||| ||
Sbjct 596546 GACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACC 596487
Query 245164 CTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219
||||| | | | |||||| |||||| | ||| || | || || || || |
Sbjct 596486 TTGGTCGA----CGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCAT 596431
Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGG 245276
| || |||||||| || ||| || | ||| | || | | ||| | || ||
Sbjct 596430 TGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTG- 596372
Query 245277 ACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336
| || | || ||||| ||||||||| | |||||| |||||| |||||| |
Sbjct 596371 --AGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAA 596314
Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396
| || || |||||||| |||||||| || || ||||| || |||||||| | || ||
Sbjct 596313 TACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGG 596254
Query 245397 GGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439
| | | | |||||||||||| || |||||| || |||||
Sbjct 596253 GCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTA 596211
Score = 215 bits (238), Expect = 1e-50
Identities = 324/449 (72%), Gaps = 21/449 (5%)
Strand=Plus/Plus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| ||||| | || |||||||| ||||||||| || |||||||||||||||||||
Sbjct 3731252 TGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCT 3731311
Query 42766 GGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||||||| || ||| | |||||| || || |||||||| ||||| | ||| |
Sbjct 3731312 GGCTCAAGAAGCGTGGTCT-GATGCCTGGCCTGACCTTCTCCAACGAGTTGATCTCGCGT 3731370
Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884
|||||||| || || | |||||||| ||||| |||||||| |||||| | | |
Sbjct 3731371 GACGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTC---CCACCTGAAGAATCGC 3731427
Query 42885 CCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944
||| |||||| ||||| | |||||||| || || || | || ||| | ||||||
Sbjct 3731428 CCCAGCAAGGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATTGAGCAAGAGTTC 3731487
Query 42945 CTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATG-TGCAAGT 43002
| || || | || ||| || ||||| | || |||||| | |||||||| |||| |
Sbjct 3731488 TTGACAGAGGCCCT-CCCTTGCGCCCTGCTGGGAATGAACTCCAACCTCATGAAGCAA-T 3731545
Query 43003 ACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCT 43056
|||| ||| || || |||| |||||| || | | |||| || || | |
Sbjct 3731546 ACATTGAGTTTGTTGCGGACCGTCTCCT---CC---TTGCTCTCGGCAACGAGAAGGTGT 3731599
Query 43057 ACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACT 43116
|| | | | |||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 3731600 ACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGAGGCAAGACCAACT 3731659
Query 43117 TTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
| || ||||||||||| | ||| ||||||
Sbjct 3731660 TCTTTGAGAAGCGCGTGGGCGAATACCAG 3731688
Score = 129 bits (142), Expect = 1e-24
Identities = 213/301 (71%), Gaps = 11/301 (4%)
Strand=Plus/Plus
Query 42300 ATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358
|||||| |||||||||||||| | || | || |||||| ||||| |||||||||||
Sbjct 3730793 ATCTGGCAGATGTACAAGAAGGCTGAAGCT-TCTTTCTGGACTGCCGAAGAGATTGACCT 3730851
Query 42359 GGCCAAGGACACGGCCGGCTGGGA-GTCACTGTC--TGAGAACGAAAAGTTTTTCCTCAA 42415
| |||||||| | || |||| | || || ||| | || || | ||| ||
Sbjct 3730852 GTCCAAGGACCTGCACGACTGGAACAACAGAATCAACGAGGATGAGAAATACTTCATCTC 3730911
Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475
|||| || |||||||| ||||| || |||||||| ||||| |||||| ||| | |
Sbjct 3730912 CCACATCCTTGCCTTCTTTGCCGCGTCAGACGGCATCGTCAACGAGAACTTGGTCGAGCG 3730971
Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
|||| ||||| ||| ||||||||| ||||||||||| |||||||| ||
Sbjct 3730972 ATTCAGCGGCGAGGTCCAGATTCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGAT 3731031
Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592
|||||| | ||||| ||| ||| || ||||||| |||| |||||| ||| ||
Sbjct 3731032 GGAGAACATACACTCCGAGACCTACTCC---CTGCTCATTGACACCTACATCAAGGAGCC 3731088
Query 42593 C 42593
|
Sbjct 3731089 C 3731089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338834068560
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