Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 313 5e-80 >seq2 Length=5746313 Score = 313 bits (346), Expect = 5e-80 Identities = 1117/1723 (65%), Gaps = 81/1723 (5%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||||| || | ||||||||| ||| | |||||||||||||| ||||| || | Sbjct 597876 TGAACTGGATAGGCTGGGCGGCGGCCTGGGTGCGGAGGTAGTACATGCCCGTCTTCAGGC 597817 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | |||| | || ||||||| ||| | ||| ||| || | || Sbjct 597816 CTAGCTTCCAGCCCGTGAAGTGCATGCTCGTGATCTTGCCCATGGTGGG---------GT 597766 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 || | || || ||| | |||||| ||||||| ||||| | || || || | Sbjct 597765 CC---CGCATGTGGATGTTCAAAGACTGGGATTGGTCGATGAAGGCACCACGGTCGGCAG 597709 Query 243921 CCATGGTGATGA-GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG 243979 |||| | | ||| | |||||| ||||| || | |||||||| | || ||||| Sbjct 597708 CCATCTGCACAACGGTTCG-CTGAGAGATCTCCCACACGGTCTTGTACAGGGCCTTGATC 597650 Query 243980 TGCTCGGGGAACCCTTCGA-TGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG 244038 | | | || || | || ||||||| | || || | | |||| | | Sbjct 597649 TCCGCCGG-AATGTTGGGAATGTTCTGGATGGAACCACCCTCAGCAATGATACGATTCTT 597591 Query 244039 CATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCAC 244098 |||||| ||| |||||| |||| | | || ||| | ||| ||| ||||| Sbjct 597590 CATGTTGTCGGACCACAGACCCATGTCGACGAGGTCCTTCAGCAGCCAGGGGTTGACCAC 597531 Query 244099 CTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGC-TGCTGAGCGGCTCGATGC 244157 ||| ||||| || | || || || || ||||| |||| || || ||||||| | Sbjct 597530 CTGGAACTCGCCAGCTAGGACACGACGAGAGTAGATGTTGGATGTATAG-GGCTCGAAAC 597472 Query 244158 TCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGAC 244217 ||| |||||||||| ||||| | || || ||||| ||||| || | || || ||||| Sbjct 597471 ACTCGTTGTTGCCCAGGATCTGAGATGTACTGGCAGTGGGCATAGGAGCCATCAACAGAC 597412 Query 244218 TGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAG-CTCGTTCCAGTCCCACATGCCC 244276 |||| | || || | | || ||| | | |||| ||| | ||||||||| | | | Sbjct 597411 TGTTGCGGACACCATTCTGCTTGATCTGCTCTTTGAGGCTC-TCCCAGTCCCAAAGGTCA 597353 Query 244277 GAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGG 244336 || || ||| | ||||||||| | || || | |||| | ||| || Sbjct 597352 GATGGGG---------TGACGTTCCACATGTCGTATTGTAGGATACCCTGGGAGACAGGT 597302 Query 244337 CTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTAC----AGCTCTCGTC 244392 |||||||||||| | |||||| || | || ||| | || |||| || Sbjct 597301 GAGCCCTCGTAGGTGGAGTAGGGTCCTTGCTCCTTGGCGATCTCCATGGAAGCTGTC--- 597245 Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCA 244452 | ||| | | ||| ||||||||||||||| |||||| | | | |||| | | Sbjct 597244 -AAGGCACCATGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGCCTAGCCTCGGGAGA 597186 Query 244453 GGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512 ||| || |||| | | || | || || || || || || |||| |||||| Sbjct 597185 CTCGAAAGGCATGCGGAGGGCTAGAAAAGCATCAGCAAGACCTTGGACACCGAGGCCGAT 597126 Query 244513 GGGTCTGTGTCGCTTGTTGGAG---CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569 ||| | ||||||| ||||| | ||| || || | || ||||| ||||| | || Sbjct 597125 GGGACGGTGTCGCATGTTGCTGTTGCGC---GCCTCTTGAACAGGGTAGTAGTTGACATC 597069 Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCA---TGCGGACGACGTCGGCCAGCAGCTGAAA 244626 || | |||||| |||||||| | || |||| ||||||| |||| |||||| Sbjct 597068 AATGATCTTGTTCAGGTTGCGCACAA-CAGTCTGCGT--GACGTCGTGCAGCTTCTGAAA 597012 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 ||| || || ||| | | || || || ||| | || || | Sbjct 597011 GTCATAGACGC------CCTGG----TTGTAGTCG--ACGAACGAGGGCAGAGCCAGAGA 596964 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG--GTGTACTGGACAATCTCGGTGCAG 244744 ||||| ||||||||||| ||||| || || || | ||| | | |||||||||||| Sbjct 596963 GGCCAAATTGCAGACGGCGACCTCATC--AGGTGCCGAGTATTCAATGATCTCGGTGCAG 596906 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG-CAGGCGTC 244803 || ||| || |||||||||||||| || || || |||| |||| || | ||| Sbjct 596905 AGATTAGAGCTGCGGATGGTGCCCAGGTTCTTTTGGTTACTCTTGCGGTTGGCATG-GTC 596847 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||||||| || || |||||| |||||| | || | | |||||| Sbjct 596846 CTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGGGCCTCCAGAATAGCATACCAGAG 596787 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | ||||||| | | ||| | |||||| |||||||| ||| ||||| Sbjct 596786 CTTCTGGGCCTTGATCTTTTGTCGACCTCGGCCCTCGGCCTCGTACTTCTCGTAGAGGGC 596727 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||||||||| ||| | || ||| | ||||| |||||| |||||||| || | Sbjct 596726 CTCGAACTCATCGCCGTAAACATCGGCCAGGCCAGGGCACTCATTGGGGCACATAAGCGT 596667 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 |||||| ||| | || || | | ||||||||| ||||| ||||||||||| |||| Sbjct 596666 CCACTCTCCGTTCTTCTCAACACGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAA 596607 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 || || | | | ||| || ||| |||||| | || |||| || ||||| Sbjct 596606 AAGATCGCGAGCGCGGACCTCTTCTTTACCATGGTTCTTTCGGAGATCCAGGAACTCAAA 596547 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| ||| |||||||||||| | |||| ||| | ||| || || ||||||||||| || Sbjct 596546 GACATCGGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGTCGCTTGTTGCCACC 596487 Query 245164 CTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 ||||| | | | |||||| |||||| | ||| || | || || || || | Sbjct 596486 TTGGTCGA----CGTATCGAGCAGTGTTGTTGAACACGCGAAGCATGGGAACAATACCAT 596431 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGG 245276 | || |||||||| || ||| || | ||| | || | | ||| | || || Sbjct 596430 TGGATGTACCGTTGGTACCGGCGATATAAGAGCCGGTCGCACGAATACGGTGGATGTTG- 596372 Query 245277 ACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 | || | || ||||| ||||||||| | |||||| |||||| |||||| | Sbjct 596371 --AGACCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAAA 596314 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396 | || || |||||||| |||||||| || || ||||| || |||||||| | || || Sbjct 596313 TACCATCAATGCTGTCATCCTTCATGTCGACAAGGAAGCAAGATGACAGCTGAGCCTGGG 596254 Query 245397 GGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 | | | | |||||||||||| || |||||| || ||||| Sbjct 596253 GCGTACCAGCGTTGAACAGAGTAGGAGAGGCGTGTGTGAAGTA 596211 Score = 215 bits (238), Expect = 1e-50 Identities = 324/449 (72%), Gaps = 21/449 (5%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| | || |||||||| ||||||||| || ||||||||||||||||||| Sbjct 3731252 TGGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCT 3731311 Query 42766 GGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| || ||| | |||||| || || |||||||| ||||| | ||| | Sbjct 3731312 GGCTCAAGAAGCGTGGTCT-GATGCCTGGCCTGACCTTCTCCAACGAGTTGATCTCGCGT 3731370 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 |||||||| || || | |||||||| ||||| |||||||| |||||| | | | Sbjct 3731371 GACGAGGGCCTACACACTGACTTTGCTTGCCTGCTGTTCTC---CCACCTGAAGAATCGC 3731427 Query 42885 CCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 ||| |||||| ||||| | |||||||| || || || | || ||| | |||||| Sbjct 3731428 CCCAGCAAGGAGAAGGTCCAGAAGATCATCACTGATGCTGTCGCTATTGAGCAAGAGTTC 3731487 Query 42945 CTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATG-TGCAAGT 43002 | || || | || ||| || ||||| | || |||||| | |||||||| |||| | Sbjct 3731488 TTGACAGAGGCCCT-CCCTTGCGCCCTGCTGGGAATGAACTCCAACCTCATGAAGCAA-T 3731545 Query 43003 ACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCT 43056 |||| ||| || || |||| |||||| || | | |||| || || | | Sbjct 3731546 ACATTGAGTTTGTTGCGGACCGTCTCCT---CC---TTGCTCTCGGCAACGAGAAGGTGT 3731599 Query 43057 ACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACT 43116 || | | | |||||||||||| |||||||||||||| ||| ||||||||||||| Sbjct 3731600 ACCGCGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGAGGCAAGACCAACT 3731659 Query 43117 TTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | || ||||||||||| | ||| |||||| Sbjct 3731660 TCTTTGAGAAGCGCGTGGGCGAATACCAG 3731688 Score = 129 bits (142), Expect = 1e-24 Identities = 213/301 (71%), Gaps = 11/301 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358 |||||| |||||||||||||| | || | || |||||| ||||| ||||||||||| Sbjct 3730793 ATCTGGCAGATGTACAAGAAGGCTGAAGCT-TCTTTCTGGACTGCCGAAGAGATTGACCT 3730851 Query 42359 GGCCAAGGACACGGCCGGCTGGGA-GTCACTGTC--TGAGAACGAAAAGTTTTTCCTCAA 42415 | |||||||| | || |||| | || || ||| | || || | ||| || Sbjct 3730852 GTCCAAGGACCTGCACGACTGGAACAACAGAATCAACGAGGATGAGAAATACTTCATCTC 3730911 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||| ||||| || |||||||| ||||| |||||| ||| | | Sbjct 3730912 CCACATCCTTGCCTTCTTTGCCGCGTCAGACGGCATCGTCAACGAGAACTTGGTCGAGCG 3730971 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| ||||||||| ||||||||||| |||||||| || Sbjct 3730972 ATTCAGCGGCGAGGTCCAGATTCCTGAGGCGCGATGCTTCTACGGTTTCCAGATCATGAT 3731031 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| |||||| ||| || Sbjct 3731032 GGAGAACATACACTCCGAGACCTACTCC---CTGCTCATTGACACCTACATCAAGGAGCC 3731088 Query 42593 C 42593 | Sbjct 3731089 C 3731089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338834068560