Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8 127 5e-24 seq4 123 6e-23 >seq8 Length=2477967 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || ||||| || | ||||| || || ||||| || ||||||| ||| ||||| ||||| Sbjct 2273359 AGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 2273300 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || |||||||||| |||||||| ||||| ||||| || ||| Sbjct 2273299 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCGGGCGGGATGCCTTCCTTGTCC 2273240 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || | || || || || || | ||| || || || || || ||||| ||| Sbjct 2273239 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 2273180 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || || || ||||||||||| |||||||| || Sbjct 2273179 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATGAT 2273145 >seq4 Length=3212107 Score = 123 bits (136), Expect = 6e-23 Identities = 170/234 (73%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | || || || |||| || ||| || || || || |||||| Sbjct 2383884 TGACCGCCACGGAGACGGAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAGTCG 2383825 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || || || || || || || ||||| |||||||||||| || Sbjct 2383824 CTCAAGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGA---TCC 2383768 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGA 288419 ||| || ||||| || |||||||| || ||| || ||||| || |||| ||| ||| Sbjct 2383767 GGGGGAATACCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCAATAGTATCCGACGA 2383709 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||||||||| || |||| ||||||||||| |||||||| Sbjct 2383708 CTCAACCTCGAGGGTGATCGTCTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 2383655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653931456018