Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01]
31 sequences; 41,729,728 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq6 93.3 9e-14
seq11 87.8 4e-12
>seq6
Length=2893484
Score = 93.3 bits (102), Expect = 9e-14
Identities = 175/252 (69%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164
|||| ||| | | ||| | || ||||| |||||| ||||| || ||| || |||| |
Sbjct 2338401 AGTCGATGGTGGTCATCTCAGTATCGGCAGAGTCGAGGTCGTGCTCGACGAAAACAGTCT 2338460
Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223
| | || | || |||| |||||| | | ||| |||| ||||| ||||| |||
Sbjct 2338461 TGACCTCACTTTGCTTAGGGAAACCCT-CGACCTGCTCGTTGTTGATAGCACGCATGAGA 2338519
Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283
|| || || || | ||||| || || || |||||||| || || ||||||||| |
Sbjct 2338520 GTAGACTTGCCGGAACCGTTCGGGCCGCAGAGACCGTAACGTCGGCCGCGCTTCAGAC-G 2338578
Query 334284 AACCGC-GTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACA 334342
|| || || | ||| ||||| || || |||| || || ||||| || |||| ||
Sbjct 2338579 AAGAGCAGTCTGGTTGAGAAGGATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAATTGCA 2338638
Query 334343 CAGATCCTCACC 334354
|||||||||||
Sbjct 2338639 GAGATCCTCACC 2338650
>seq11
Length=1453465
Score = 87.8 bits (96), Expect = 4e-12
Identities = 181/266 (68%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 333725 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 333784
||| || ||||||||||| |||||| || | | |||||| | ||||||||| ||
Sbjct 987223 CTTGACAAACTCGGACAGGTTTCCCCTGAAATGGCCTAGCTTTTTGCCAGGTTCGTAGTG 987282
Query 333785 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 333844
| ||| |||| ||| ||| ||||| ||||| ||||| || || |||| || |
Sbjct 987283 GTAAATGTCGGTGGTGACATTGTCCAGGAAACCGGAATCGTGGGAAACGATCAGGCTAGT 987342
Query 333845 AACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAGA 333902
|| |||| | || | ||||||| ||| || ||||| | || | ||| |
Sbjct 987343 AATGTCCGTGTGGGTTTTCAGGTAGTTC--TCAAGCCATGCAATATTGGTAACATCCAAG 987400
Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962
|||||||| || ||||| ||||| || | | || ||| | ||||| || | || |
Sbjct 987401 TGGTTGGTAGGTTCGTCGAGAAGGAGGACATCGGCTTTCTGAAGCATGGCTCTAGCCAAC 987460
Query 333963 GCGAGTTTCATTTTCCACCCTCCTGA 333988
|| | ||||||||||| || |||||
Sbjct 987461 GCCAACTTCATTTTCCATCCACCTGA 987486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102879561949850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |