Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Didymobotryum_20rigidum_20[genbank_20GCA_5F001600575.1_202016-03-01] 31 sequences; 41,729,728 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 9e-14 seq11 87.8 4e-12 >seq6 Length=2893484 Score = 93.3 bits (102), Expect = 9e-14 Identities = 175/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||| ||| | | ||| | || ||||| |||||| ||||| || ||| || |||| | Sbjct 2338401 AGTCGATGGTGGTCATCTCAGTATCGGCAGAGTCGAGGTCGTGCTCGACGAAAACAGTCT 2338460 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | || | || |||| |||||| | | ||| |||| ||||| ||||| ||| Sbjct 2338461 TGACCTCACTTTGCTTAGGGAAACCCT-CGACCTGCTCGTTGTTGATAGCACGCATGAGA 2338519 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || || || |||||||| || || ||||||||| | Sbjct 2338520 GTAGACTTGCCGGAACCGTTCGGGCCGCAGAGACCGTAACGTCGGCCGCGCTTCAGAC-G 2338578 Query 334284 AACCGC-GTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACA 334342 || || || | ||| ||||| || || |||| || || ||||| || |||| || Sbjct 2338579 AAGAGCAGTCTGGTTGAGAAGGATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAATTGCA 2338638 Query 334343 CAGATCCTCACC 334354 ||||||||||| Sbjct 2338639 GAGATCCTCACC 2338650 >seq11 Length=1453465 Score = 87.8 bits (96), Expect = 4e-12 Identities = 181/266 (68%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 333725 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 333784 ||| || ||||||||||| |||||| || | | |||||| | ||||||||| || Sbjct 987223 CTTGACAAACTCGGACAGGTTTCCCCTGAAATGGCCTAGCTTTTTGCCAGGTTCGTAGTG 987282 Query 333785 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 333844 | ||| |||| ||| ||| ||||| ||||| ||||| || || |||| || | Sbjct 987283 GTAAATGTCGGTGGTGACATTGTCCAGGAAACCGGAATCGTGGGAAACGATCAGGCTAGT 987342 Query 333845 AACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAAGA 333902 || |||| | || | ||||||| ||| || ||||| | || | ||| | Sbjct 987343 AATGTCCGTGTGGGTTTTCAGGTAGTTC--TCAAGCCATGCAATATTGGTAACATCCAAG 987400 Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 |||||||| || ||||| ||||| || | | || ||| | ||||| || | || | Sbjct 987401 TGGTTGGTAGGTTCGTCGAGAAGGAGGACATCGGCTTTCTGAAGCATGGCTCTAGCCAAC 987460 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGA 333988 || | ||||||||||| || ||||| Sbjct 987461 GCCAACTTCATTTTCCATCCACCTGA 987486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879561949850